PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G02430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 960aa    MW: 105803 Da    PI: 8.9164
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G02430.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.3e-07321341526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f + G C++G++C++ H+
  ONIVA08G02430.1 321 PCHDFVK-GRCSRGANCRYVHD 341
                      8******.*************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 960 aa     Download sequence    
MTGETRKERS KWDTKGPPDI VEISEDESLP MNMDDHKKGN DDHRKGNDLL PSQDFGHGND  60
KQIGESVNLK STVSMHHGSA GHEHDRADGL NKDIKERSSK ASSERLPLRM GDEDHNKNDW  120
HNRGFEKAAG NQGMGRYADD RRRGDGWGTT LSRGYSSRIS SSGPDAWKRS RSPLSPRGGW  180
NRSRRNRSRS RSRSRSRSIG RGRGRSRSRS RSPYFSDRGS EWRVERGRSS GGPALPCRDF  240
VAGRCRRGSN CRFPHEDGVR RQLDEHYPVD SRERYGHQNR DFMDPREQDD YLRSRPLRGG  300
HYDEGTWERS EPRREYRSTM PCHDFVKGRC SRGANCRYVH DDSTSHGGWR DEVRDNAIGR  360
SGPDSSYGNR TEHRRTNKNP CKFFANGGCR RGQNCPYLHE EASQSQMGLG APDEPGYTGG  420
PTTRGDYLSW SEQNNSVQAS SHVLSRDDRE NPVPQGTGRN DSRYENKNRH SKDAGSSQYQ  480
IFPQDDFGSV GQNKPEIAAS QLPQFIPSVQ TGTESINIDK VSDMGGQSGP GTVGNLSMQI  540
GMHSANLLGG HNLGQKAESQ DAISQISAAP SLPGATQLQN TTSSVPLNSQ VQQSDFSLHP  600
NRQDQFAVPH ATTNNSAPSM QSQPVAPYMG HSQHGYIMGA QSLPDLSVHN GQIFNVGQVP  660
QNLPTIMHAG QNQATSDTAN LGRDSGDQSL HNTHNFQPVA PNEQTQSQTL QGLSVVASSS  720
SVDMAGAPLS HNAVSSQEEV RRVTASLAQY FVPSLTADTS GLQSSQPDPN SSLMNNSSAA  780
PQAVQPNHWP WLQQAGMVQP SHIFPSEQPA PQTFQAPMAA GSSNGNPLIL PHSVAPTGPA  840
AALATNETTP AENKKEEPKD TDAEANEDGE NKKSKDSKAL KMFKLALADF VKDALKPTWK  900
EGQMSREVHK TIVKKVVDKV TTTVENTPQT KEKIDIYMSY SREKLNKLVQ AYVGKYAKKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185193RNRSRSRSR
2185195RNRSRSRSRSR
3187195RNRSRSRSR
4187197RNRSRSRSRSR
5189197RNRSRSRSR
6201211RNRSRSRSRSR
7203211RNRSRSRSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-09C3H family protein