PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G02430.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 960aa MW: 105803 Da PI: 8.9164

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G02430.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.5	8.3e-07	321	341	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + G C++G++C++ H+ ONIVA08G02430.1 321 PCHDFVK-GRCSRGANCRYVHD 341 8****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence
MTGETRKERS KWDTKGPPDI VEISEDESLP MNMDDHKKGN DDHRKGNDLL PSQDFGHGND 60 KQIGESVNLK STVSMHHGSA GHEHDRADGL NKDIKERSSK ASSERLPLRM GDEDHNKNDW 120 HNRGFEKAAG NQGMGRYADD RRRGDGWGTT LSRGYSSRIS SSGPDAWKRS RSPLSPRGGW 180 NRSRRNRSRS RSRSRSRSIG RGRGRSRSRS RSPYFSDRGS EWRVERGRSS GGPALPCRDF 240 VAGRCRRGSN CRFPHEDGVR RQLDEHYPVD SRERYGHQNR DFMDPREQDD YLRSRPLRGG 300 HYDEGTWERS EPRREYRSTM PCHDFVKGRC SRGANCRYVH DDSTSHGGWR DEVRDNAIGR 360 SGPDSSYGNR TEHRRTNKNP CKFFANGGCR RGQNCPYLHE EASQSQMGLG APDEPGYTGG 420 PTTRGDYLSW SEQNNSVQAS SHVLSRDDRE NPVPQGTGRN DSRYENKNRH SKDAGSSQYQ 480 IFPQDDFGSV GQNKPEIAAS QLPQFIPSVQ TGTESINIDK VSDMGGQSGP GTVGNLSMQI 540 GMHSANLLGG HNLGQKAESQ DAISQISAAP SLPGATQLQN TTSSVPLNSQ VQQSDFSLHP 600 NRQDQFAVPH ATTNNSAPSM QSQPVAPYMG HSQHGYIMGA QSLPDLSVHN GQIFNVGQVP 660 QNLPTIMHAG QNQATSDTAN LGRDSGDQSL HNTHNFQPVA PNEQTQSQTL QGLSVVASSS 720 SVDMAGAPLS HNAVSSQEEV RRVTASLAQY FVPSLTADTS GLQSSQPDPN SSLMNNSSAA 780 PQAVQPNHWP WLQQAGMVQP SHIFPSEQPA PQTFQAPMAA GSSNGNPLIL PHSVAPTGPA 840 AALATNETTP AENKKEEPKD TDAEANEDGE NKKSKDSKAL KMFKLALADF VKDALKPTWK 900 EGQMSREVHK TIVKKVVDKV TTTVENTPQT KEKIDIYMSY SREKLNKLVQ AYVGKYAKKD

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence

MTGETRKERS KWDTKGPPDI VEISEDESLP MNMDDHKKGN DDHRKGNDLL PSQDFGHGND  60
KQIGESVNLK STVSMHHGSA GHEHDRADGL NKDIKERSSK ASSERLPLRM GDEDHNKNDW  120
HNRGFEKAAG NQGMGRYADD RRRGDGWGTT LSRGYSSRIS SSGPDAWKRS RSPLSPRGGW  180
NRSRRNRSRS RSRSRSRSIG RGRGRSRSRS RSPYFSDRGS EWRVERGRSS GGPALPCRDF  240
VAGRCRRGSN CRFPHEDGVR RQLDEHYPVD SRERYGHQNR DFMDPREQDD YLRSRPLRGG  300
HYDEGTWERS EPRREYRSTM PCHDFVKGRC SRGANCRYVH DDSTSHGGWR DEVRDNAIGR  360
SGPDSSYGNR TEHRRTNKNP CKFFANGGCR RGQNCPYLHE EASQSQMGLG APDEPGYTGG  420
PTTRGDYLSW SEQNNSVQAS SHVLSRDDRE NPVPQGTGRN DSRYENKNRH SKDAGSSQYQ  480
IFPQDDFGSV GQNKPEIAAS QLPQFIPSVQ TGTESINIDK VSDMGGQSGP GTVGNLSMQI  540
GMHSANLLGG HNLGQKAESQ DAISQISAAP SLPGATQLQN TTSSVPLNSQ VQQSDFSLHP  600
NRQDQFAVPH ATTNNSAPSM QSQPVAPYMG HSQHGYIMGA QSLPDLSVHN GQIFNVGQVP  660
QNLPTIMHAG QNQATSDTAN LGRDSGDQSL HNTHNFQPVA PNEQTQSQTL QGLSVVASSS  720
SVDMAGAPLS HNAVSSQEEV RRVTASLAQY FVPSLTADTS GLQSSQPDPN SSLMNNSSAA  780
PQAVQPNHWP WLQQAGMVQP SHIFPSEQPA PQTFQAPMAA GSSNGNPLIL PHSVAPTGPA  840
AALATNETTP AENKKEEPKD TDAEANEDGE NKKSKDSKAL KMFKLALADF VKDALKPTWK  900
EGQMSREVHK TIVKKVVDKV TTTVENTPQT KEKIDIYMSY SREKLNKLVQ AYVGKYAKKD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	193	RNRSRSRSR
2	185	195	RNRSRSRSRSR
3	187	195	RNRSRSRSR
4	187	197	RNRSRSRSRSR
5	189	197	RNRSRSRSR
6	201	211	RNRSRSRSRSR
7	203	211	RNRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-09	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G02430.1