PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G01810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LSD
Protein Properties Length: 106aa    MW: 11619.4 Da    PI: 9.2597
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G01810.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD128.52.6e-09628123
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCd 23
                     C+gC tlL Y rGA+++RC++C+
  ONIVA08G01810.1  6 CSGCPTLLFYNRGASNIRCPSCN 28
                     **********************8 PP

2zf-LSD133.28.4e-114468125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     Cg+Crt+L+ P+GA+ V+Ca C  V
  ONIVA08G01810.1 44 CGQCRTTLMHPPGASTVQCATCRYV 68
                     **********************876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    
MSELICSGCP TLLFYNRGAS NIRCPSCNRL NSTRSANQIA HLTCGQCRTT LMHPPGASTV  60
QCATCRYVNH VRDARPQTVL VENPKTLDDK GKLVSNVVVG VTSWKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.19e-29LSD family protein