PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA08G00920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 220aa MW: 24974.8 Da PI: 7.9772 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.5 | 8.7e-24 | 10 | 56 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien rqvtf+kRr+g+lKKA ELS+LC+a++ +iifs +gkly+ ONIVA08G00920.1 10 RIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYD 56 8********************************************97 PP | |||||||
2 | K-box | 21 | 1.4e-08 | 88 | 170 | 17 | 86 |
K-box 17 lqqelakLkkeienLqreqRhllGedL.............esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 +qe+ Lk+ei+ Lq+ +Rhl +++ e ++++eL+ Le+ Le + +iRs K+ +l++ e lq+k e ONIVA08G00920.1 88 PKQEAMVLKQEINLLQKGLRHLTLDKIkthgryiygnranEHMTVEELNALERYLEIWMYNIRSAKEGMLKAANEILQEKIVE 170 456666666666666655555544444111111133333357************************************99765 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence |
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSILCE ADIGIIIFSA HGKLYDLATT 60 GTMEELIERY KSASGEQANA CGDQRMDPKQ EAMVLKQEIN LLQKGLRHLT LDKIKTHGRY 120 IYGNRANEHM TVEELNALER YLEIWMYNIR SAKEGMLKAA NEILQEKIVE QNGLIDVGMM 180 VADQQNGHFS TVPLLEEITN PLTILSGYST CRGSEMGYSF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-48 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | ONIVA08G00920.1 |