PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA07G18470.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 244aa MW: 26511.6 Da PI: 7.2375

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G18470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.5e-19	62	115	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+e Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k ONIVA07G18470.1 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHK 115 45589***********************************************99 PP
2	HD-ZIP_I/II	116.2	1.8e-37	62	152	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+eqv++LE sF+ee+kLe+ rKv+la+eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da ++++Le+ev +L+e+l ONIVA07G18470.1 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLV 152 9**************************************************************************************9885 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MDRYGEKQQQ QQMFASYVDA SLLAASGEVQ GERPRARRRR RRGARCVGGG GGGGEVDGGD 60 PKKRRLSDEQ VEMLELSFRE ERKLETGRKV HLASELGLDP KQVAVWFQNR RARHKSKLLE 120 EEFSKLKHAH DAAILHKCHL ENEVLRLKER LVVAEEEVRR LRSAAGSHTA SGEGGDIMGL 180 GGSGACVAGS PSSSFSTGTC QPPSFGGGGG GGDHLGDDDL VYVPEYGGYA DNSVVEWFSL 240 YGLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	42	RPRARRRRRR
2	37	42	RRRRRR
3	37	45	RRRRRRGAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-31	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	ONIVA07G18470.1