PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G17480.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 650aa    MW: 68728.2 Da    PI: 6.9416
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G17480.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-08278300426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C++f+r G C+ Gd+C F+Hg
  ONIVA07G17480.3 278 VPCPNFRRPGGCPSGDSCEFSHG 300
                      79********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    
MGELADLVVV PSQPPLAGGR RDRLAALLEL AAADDVDGLR GALAEGGEEA AELADGVGLW  60
YGRSKAYEAR TPLMVAATYG SAGVVSLLVG LGGCVDVNRR PGADGATALH CAASGGSRNA  120
VAVVKLLLAA GADPATSDSA GRFPADVILA PPASPDALGD LEVLLGRRRA LAVATSVASG  180
SSSPPLSSSP DEGNRSPSSR SSSLSPITVD RGKKEYPVDP TLPDIKSSVY ASDEFRMFAF  240
KVRPCSRAYS HDWTECPFVH PGENARRRDP RKHPYTAVPC PNFRRPGGCP SGDSCEFSHG  300
VFESWLHPSQ YRTRLCKEGA ACARRICFFA HDEDELRHVP HNSGAGLLSP RASSSIDMTA  360
AAALGLLPGS PTRHFAPPPV SPSAGSNGGA AAAHWLQGSR LRSSFNARDA AVDDLGMLLE  420
WESQYLGALC LPPSSRPQPR LSAGLSIRPT IAPSNLEDMY ASDMAMSPRF PNDQGHSVYS  480
PAHKSALLNK LHQQKGLLSP VNTNRMYSPR ALDPSSLAHS PFGGMSPRSP RTMEPTSPLS  540
ARLPSVGSPR NSTAWGTVGS PMGKVDWGVD SEELVRLRRP AQPGFGEDET DVSWVQSLVS  600
NAELNGKRGE VQGMPGTSAL MNRPDLNNQG DLLDQTVIGA WLEQMHLDQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-123C3H family protein