PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G29220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 448aa MW: 49177.5 Da PI: 10.0026 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.4 | 3.3e-10 | 5 | 26 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+Cr+f+r G CkyG++C++ H ONIVA06G29220.1 5 QEICRNFQR-GSCKYGAQCRYLH 26 79*******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence |
MSRRQEICRN FQRGSCKYGA QCRYLHASPH QQQQQQQQQA KPNPFGFGTG SRQQQQPSFG 60 SQFQQQQQQQ QKPNPFGFGV QGANAQSRNA PGPAKPFQNK WVRDPSAPTK QAEAVQPPQA 120 QAAHTSCEDP QSCRQQISED FKNEAPIWKL TCYAHLRNGP CDIKGDISFE ELRAKAYEEG 180 KQGHSLQSIV EGERNLQNAK LMEFTNLLNS ARPSQTPSFP TMSSFPEVKN NSSFGASQTN 240 GPPVFSSFSQ IGAATNIGPG PGTTTPGMPA SSPFGHPSSA PLAAPTFGSS QMKFGVSSVF 300 GNQGSGQPFG SFQAPRFPSS KSPASSVQHR DIDRQSQELL NGMVTPPSVM FEESVGNNKN 360 ENQDDSIWLK EKWAIGEIPL DEPPQRHSRK PSGSFGSSCS SINNFLKSSA GTTKMKMKMN 420 NLVKEKWAIG ELQGQQRNST TNRRRIHE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 2e-48 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA06G29220.1 |