PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G29090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARF | ||||||||
Protein Properties | Length: 1127aa MW: 124560 Da PI: 6.434 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.7 | 9.6e-23 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++ ONIVA06G29090.1 121 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RD 210 99*****************************954.4444.49************************************************..56 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++++l+++++r+ ONIVA06G29090.1 211 EKQQLLLGIRRA 222 88889****997 PP | |||||||
2 | Auxin_resp | 118 | 7.8e-39 | 247 | 330 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g+sdldpvrW+nS+Wr+L+ ONIVA06G29090.1 247 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 330 79**********************************9*********************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1127 aa Download sequence |
MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV 60 SLPPAGSLVV YFPQGHSEQA DPETDEVYAQ MTLQPVTSYG KEALQLSELA LKQARPQTEF 120 FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LQARDLHDNV WTFRHIYRGQ 180 PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS SSVLSSDSMH 240 IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQISLGM RFRMMFETEE 300 LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI EPVAAPFFIC 360 PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL SLVQWMNMNM 420 QQSSSFANTA MQSEYLRSLS NPNMQNLGAA DLSRQLCLQN QLLQQNNIQF NTPKLSQQMQ 480 PVNELAKAGI PLNQLGVSTK PQEQIHDASN LQRQQPSMNH MLPLSQAQTN LGQAQVLVQN 540 QMQQQHASST QGQQPATSQP LLLPQQQQQQ QQQQQQQQQQ QQQKLLQQQQ QQLLLQQQQQ 600 LSKMPAQLSS LANQQFQLTD QQLQLQLLQK LQQQQQSLLS QPAVTLAQLP LIQEQQKLLL 660 DMQQQLSNSQ TLSQQQMMPQ QSTKVPSQNT PLPLPVQQEP QQKLLQKQAM LADTSEAAVP 720 PTTSVNVIST TGSPLMTTGA THSVLTEEIP SCSTSPSTAN GNHLLQPILG RNKHCSMINT 780 EKVPQSAAPM SVPSSLEAVT ATPRMMKDSP KLNHNVKQSV VASKLANAGT GSQNYVNNPP 840 PTDYLETASS ATSVWLSQND GLLHQNFPMS NFNQPQMFKD APPDAEIHAA NTSNNALFGI 900 NGDGPLGFPI GLGTDDFLSN GIDAAKYENH ISTEIDNSYR IPKDAQQEIS SSMVSQSFGA 960 SDMAFNSIDS TINDGGFLNR SSWPPAAPLK RMRTFTKVYK RGAVGRSIDM SQFSGYDELK 1020 HALARMFSIE GQLEERQRIG WKLVYKDHED DILLLGDDPW EEFVGCVKCI RILSPQEVQQ 1080 MSLEGCDLGN NIPPNQACSS SDGGNAWRAR CDQNSGNPSN GSYEQFE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA06G29090.1 |