PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G28270.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

ARF

Protein Properties

Length: 701aa MW: 75993.4 Da PI: 7.7407

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G28270.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.9	4.4e-24	128	229	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+ ++ ONIVA06G28270.2 128 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RT 217 89**************************996555555..8999*****************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ ONIVA06G28270.2 218 ENGDLCVGIRRA 229 88999**997 PP
2	Auxin_resp	112.9	3.1e-37	293	376	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++FevvY+Prast+eF+vk+ v++a+++++ +GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ ONIVA06G28270.2 293 AANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 376 688999****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MITFVDSAAK ERERESDKCL DPQLWHACAG GMVQMPPVSS KVYYFPQGHA EHAQGHGPVE 60 FPGGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN EQGYAGDADD GIGAAAAAAA 120 QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF 180 RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPEFL 240 PPPPPPPPPT PAAGGNYGGF SMFLRGDDDG NKMAAAARGK VRARVRPEEV VEAANLAVSG 300 QPFEVVYYPR ASTPEFCVKA GAVRAAMRTQ WFAGMRFKMA FETEDSSRIS WFMGTVSAVQ 360 VADPIRWPNS PWRLLQVSWD EPDLLQNVKR VSPWLVELVS NMPAIHLAPF SPPRKKLCVP 420 LYPELPIDGQ FPTPMFHGNP LARGVGPMCY FPDGTPAGIQ GARHAQFGIS LSDLHLNKLQ 480 SSLSPHGLHQ LDHGMQPRIA AGLIIGHPAA RDDISCLLTI GSPQNNKKSD AKKAPAQLML 540 FGKPILTEQQ ISLGDAASVA VKKSSSDGNA ENTVNKSNSD VSSPRSNQNG TTDNLSCGGV 600 PLCQDNKVLD VALETGHCKV FMQSEDVGRT LDLSVVGSYE ELYRRLADMF SIEKAELMSH 660 VFYRDAAGAL KHTGDEPFSE FTKTARRLNI LTDTSGDNLA R

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MITFVDSAAK ERERESDKCL DPQLWHACAG GMVQMPPVSS KVYYFPQGHA EHAQGHGPVE  60
FPGGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN EQGYAGDADD GIGAAAAAAA  120
QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF  180
RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPEFL  240
PPPPPPPPPT PAAGGNYGGF SMFLRGDDDG NKMAAAARGK VRARVRPEEV VEAANLAVSG  300
QPFEVVYYPR ASTPEFCVKA GAVRAAMRTQ WFAGMRFKMA FETEDSSRIS WFMGTVSAVQ  360
VADPIRWPNS PWRLLQVSWD EPDLLQNVKR VSPWLVELVS NMPAIHLAPF SPPRKKLCVP  420
LYPELPIDGQ FPTPMFHGNP LARGVGPMCY FPDGTPAGIQ GARHAQFGIS LSDLHLNKLQ  480
SSLSPHGLHQ LDHGMQPRIA AGLIIGHPAA RDDISCLLTI GSPQNNKKSD AKKAPAQLML  540
FGKPILTEQQ ISLGDAASVA VKKSSSDGNA ENTVNKSNSD VSSPRSNQNG TTDNLSCGGV  600
PLCQDNKVLD VALETGHCKV FMQSEDVGRT LDLSVVGSYE ELYRRLADMF SIEKAELMSH  660
VFYRDAAGAL KHTGDEPFSE FTKTARRLNI LTDTSGDNLA R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G28270.2