PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G28270.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

ARF

Protein Properties

Length: 720aa MW: 78402.2 Da PI: 8.0448

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G28270.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.9	4.6e-24	147	248	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+ ++ ONIVA06G28270.1 147 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RT 236 89**************************996555555..8999*****************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ ONIVA06G28270.1 237 ENGDLCVGIRRA 248 88999**997 PP
2	Auxin_resp	112.8	3.2e-37	312	395	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++FevvY+Prast+eF+vk+ v++a+++++ +GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ ONIVA06G28270.1 312 AANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 395 688999****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence
MERGRLHAFV YLYFPNKREM ITFVDSAAKE RERESDKCLD PQLWHACAGG MVQMPPVSSK 60 VYYFPQGHAE HAQGHGPVEF PGGRVPALVL CRVAGVRFMA DPDTDEVFAK IRLVPVRANE 120 QGYAGDADDG IGAAAAAAAQ EEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA 180 DPPVQTVLAK DVHGVVWKFR HIYRGTPRRH LLTTGWSTFV NQKKLVAGDS IVFMRTENGD 240 LCVGIRRAKK GGVGGPEFLP PPPPPPPPTP AAGGNYGGFS MFLRGDDDGN KMAAAARGKV 300 RARVRPEEVV EAANLAVSGQ PFEVVYYPRA STPEFCVKAG AVRAAMRTQW FAGMRFKMAF 360 ETEDSSRISW FMGTVSAVQV ADPIRWPNSP WRLLQVSWDE PDLLQNVKRV SPWLVELVSN 420 MPAIHLAPFS PPRKKLCVPL YPELPIDGQF PTPMFHGNPL ARGVGPMCYF PDGTPAGIQG 480 ARHAQFGISL SDLHLNKLQS SLSPHGLHQL DHGMQPRIAA GLIIGHPAAR DDISCLLTIG 540 SPQNNKKSDA KKAPAQLMLF GKPILTEQQI SLGDAASVAV KKSSSDGNAE NTVNKSNSDV 600 SSPRSNQNGT TDNLSCGGVP LCQDNKVLDV ALETGHCKVF MQSEDVGRTL DLSVVGSYEE 660 LYRRLADMFS IEKAELMSHV FYRDAAGALK HTGDEPFSEF TKTARRLNIL TDTSGDNLAR

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence

MERGRLHAFV YLYFPNKREM ITFVDSAAKE RERESDKCLD PQLWHACAGG MVQMPPVSSK  60
VYYFPQGHAE HAQGHGPVEF PGGRVPALVL CRVAGVRFMA DPDTDEVFAK IRLVPVRANE  120
QGYAGDADDG IGAAAAAAAQ EEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA  180
DPPVQTVLAK DVHGVVWKFR HIYRGTPRRH LLTTGWSTFV NQKKLVAGDS IVFMRTENGD  240
LCVGIRRAKK GGVGGPEFLP PPPPPPPPTP AAGGNYGGFS MFLRGDDDGN KMAAAARGKV  300
RARVRPEEVV EAANLAVSGQ PFEVVYYPRA STPEFCVKAG AVRAAMRTQW FAGMRFKMAF  360
ETEDSSRISW FMGTVSAVQV ADPIRWPNSP WRLLQVSWDE PDLLQNVKRV SPWLVELVSN  420
MPAIHLAPFS PPRKKLCVPL YPELPIDGQF PTPMFHGNPL ARGVGPMCYF PDGTPAGIQG  480
ARHAQFGISL SDLHLNKLQS SLSPHGLHQL DHGMQPRIAA GLIIGHPAAR DDISCLLTIG  540
SPQNNKKSDA KKAPAQLMLF GKPILTEQQI SLGDAASVAV KKSSSDGNAE NTVNKSNSDV  600
SSPRSNQNGT TDNLSCGGVP LCQDNKVLDV ALETGHCKVF MQSEDVGRTL DLSVVGSYEE  660
LYRRLADMFS IEKAELMSHV FYRDAAGALK HTGDEPFSEF TKTARRLNIL TDTSGDNLAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G28270.1