PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G28080.2
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 354aa    MW: 40388.2 Da    PI: 9.1223
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G28080.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-071437126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ykt+lC  +++ G+C++ ++C+FaHg
  ONIVA06G28080.2 14 YKTKLCALWRQ-GECNR-ASCSFAHG 37
                     9**********.*****.*******9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MREMMGPPRR GPAYKTKLCA LWRQGECNRA SCSFAHGDAE LRGQPPRSPF PPRGGPGRRD  60
HRPDDFRGRH LRPHRRNSPE RDARDHLFRD HRPRSRDRGS SHSRSPIRKR YGARGRHRKK  120
LEGGKTNSSE SLNSSDNEDR KKDDRFNKAD DKHDNEAQLQ RIQLDMEALH EEKSSLEVIL  180
NGKINEASKL SSRIADLESQ LNDEKEACER SQARFERFAD LLASDTLKPC SKDQGSSAAK  240
EDPYNAYEMS PSDQRQNHET TRKRSVALST SEEGRNGKKR RESYDNRDPM SEKYRPEDAL  300
EPFQSSKGTE AKELLSVKKN LGDGDNNEKG NVVSSANVFT DRYEGGDDDD VLVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262281RKRSVALSTSEEGRNGKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-06C3H family protein