PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G28080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 348aa MW: 39727.5 Da PI: 8.7013 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.8 | 1.7e-07 | 14 | 37 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +++ G+C++ ++C+FaHg ONIVA06G28080.1 14 YKTKLCALWRQ-GECNR-ASCSFAHG 37 9**********.*****.*******9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence |
MREMMGPPRR GPAYKTKLCA LWRQGECNRA SCSFAHGDAE LRGQPPRSPF PPRGGPGRRD 60 HRPDDFRGRH LRPHRRNSPE RDARDHLFRD HRPRSRDRGS SHSRSPIRKR HRKKLEGGKT 120 NSSESLNSSD NEDRKKDDRF NKADDKHDNE AQLQRIQLDM EALHEEKSSL EVILNGKINE 180 ASKLSSRIAD LESQLNDEKE ACERSQARFE RFADLLASDT LKPCSKDQGS SAAKEDPYNA 240 YEMSPSDQRQ NHETTRKRSV ALSTSEEGRN GKKRRESYDN RDPMSEKYRP EDALEPFQSS 300 KGTEAKELLS VKKNLGDGDN NEKGNVVSSA NVFTDRYEGG DDDDVLVD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 256 | 275 | RKRSVALSTSEEGRNGKKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 1e-06 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA06G28080.1 |