PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G27990.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 344aa MW: 37459.4 Da PI: 7.9721

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G27990.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	116.3	1.6e-36	67	144	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC +l key+r+h+vCe h+k+ v+v+g+ +rfCqqCsrfh+ sefD+ekrsCrrrL++hn+rrrk+q+ ONIVA06G27990.1 67 RCQVEGCGLELGGYKEYYRKHRVCEPHTKCLRVVVAGQDRRFCQQCSRFHAPSEFDQEKRSCRRRLSDHNARRRKPQT 144 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MECNPVSSST TSSSLLWDWD ATASAEPPPP PGKRGGRDSS SASASAKRGR SAAAAGDAAA 60 VAAEAPRCQV EGCGLELGGY KEYYRKHRVC EPHTKCLRVV VAGQDRRFCQ QCSRFHAPSE 120 FDQEKRSCRR RLSDHNARRR KPQTDVFAFG SGTLPRSLFD DRRQISFAWD NNAPLNHANT 180 TSSSSWTSDL QLSQVMDISK RSRKAGADSA NIRLSNALPT LCHDTNELLP IKGADASETA 240 SKLDGALDVQ RALSLLSASS RGLTDPGHQT SSIIQFTNSN QNSTLPSVPS EGNSNVPFWV 300 DGQHQAVEPQ VFQFTMDTGN TVFPDLERIK PSYESSMFGL NQIH

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MECNPVSSST TSSSLLWDWD ATASAEPPPP PGKRGGRDSS SASASAKRGR SAAAAGDAAA  60
VAAEAPRCQV EGCGLELGGY KEYYRKHRVC EPHTKCLRVV VAGQDRRFCQ QCSRFHAPSE  120
FDQEKRSCRR RLSDHNARRR KPQTDVFAFG SGTLPRSLFD DRRQISFAWD NNAPLNHANT  180
TSSSSWTSDL QLSQVMDISK RSRKAGADSA NIRLSNALPT LCHDTNELLP IKGADASETA  240
SKLDGALDVQ RALSLLSASS RGLTDPGHQT SSIIQFTNSN QNSTLPSVPS EGNSNVPFWV  300
DGQHQAVEPQ VFQFTMDTGN TVFPDLERIK PSYESSMFGL NQIH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	1e-39	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G27990.1