PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G26970.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 518aa MW: 57136.6 Da PI: 7.2113

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G26970.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.3e-05	265	287	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F++ L H+++H ONIVA06G26970.1 265 YSCSFCGREFRSAQALGGHMNVH 287 99*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MAFLCERLPP VLLLVDVVFV CAVYAAHRCG TLVDFVCAVG VVVELLYKMV YHKVNKTKSE 60 AQDQQTCGEV DPGGEEEKQS KGRVQDGANI KEKRITKQSA QVMAQESKLD LLLKTLEENE 120 KRRQEAEARA RADVAEIKAA VESRLPQMEK CITDINSALG ALNHKVEQLE DSVAKGAGLE 180 KLGRDLKVET SEQLGDQTPK FLHARYWILA RRKLGDQKAP LFPTPHITIG AGGSSASYYE 240 SWEERAFAED SAGHLGGCIW PPRSYSCSFC GREFRSAQAL GGHMNVHRRD RARLKLSGVV 300 EDGTGGESHG MPPNQNYMIQ PCPPQIGTLQ HAYSPNPRSG SILAADTNPN SICDVVAYPA 360 RSLLQVAAAR TALGKQVLNA PLVSSKSPSA GREHGKRETL FLGAVRLAQD HDTVSSNLDL 420 RVGKNELKIT TVLGCRSRRD FMYDNDRADD EKTVEASHKK RRIDLEVNPL ILTSSTSNHQ 480 QQDGGDDQHH EKILKLYRSS SVEELDLELR LGEAPKEQ

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MAFLCERLPP VLLLVDVVFV CAVYAAHRCG TLVDFVCAVG VVVELLYKMV YHKVNKTKSE  60
AQDQQTCGEV DPGGEEEKQS KGRVQDGANI KEKRITKQSA QVMAQESKLD LLLKTLEENE  120
KRRQEAEARA RADVAEIKAA VESRLPQMEK CITDINSALG ALNHKVEQLE DSVAKGAGLE  180
KLGRDLKVET SEQLGDQTPK FLHARYWILA RRKLGDQKAP LFPTPHITIG AGGSSASYYE  240
SWEERAFAED SAGHLGGCIW PPRSYSCSFC GREFRSAQAL GGHMNVHRRD RARLKLSGVV  300
EDGTGGESHG MPPNQNYMIQ PCPPQIGTLQ HAYSPNPRSG SILAADTNPN SICDVVAYPA  360
RSLLQVAAAR TALGKQVLNA PLVSSKSPSA GREHGKRETL FLGAVRLAQD HDTVSSNLDL  420
RVGKNELKIT TVLGCRSRRD FMYDNDRADD EKTVEASHKK RRIDLEVNPL ILTSSTSNHQ  480
QQDGGDDQHH EKILKLYRSS SVEELDLELR LGEAPKEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	3e-25	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G26970.1