PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G26100.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 2069aa MW: 226934 Da PI: 7.4645

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G26100.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17	1e-05	1940	1961	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ f +tG+C+ G+rCk +H++ ONIVA06G26100.1 1940 CPVFEATGECPQGSRCKLHHPK 1961 *****************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 2069 aa Download sequence
MDPPPPFDHP LHRRHYSDHH HFPPGGSGGS GGAASAAARS RYEYGGGGGG GYESHSHHQY 60 HLPDHHHHHH HPPPRVQHHH HHHHQQLPAP TPPPPPPPPL PQHRLEPPPP HYGFPPRGHP 120 DAYSPPPYHD PSPHHHYHRH GGDDFLPADE IRRVGGGHHH HHHHPQLQQL LPWEEAEEER 180 RRYGGATQQL RLSPSGPRKR QRGAVHDADV ESTSSSGPPP RRQRQQPHPD YALDDSFVDR 240 NNAHPGYMVH EGFSIHSDSK VSRKIQMPTQ MALPGSPHGT SAGYARRAPQ KVAPSRVSVW 300 HRIEENPAMY EPSSPPPHMP KEVHVSPCKS NNVAPASKEL ASVISVDCRG KSADGNDGDS 360 NTGTKKNPVK KNEKVLASVL VKPPMEPKEK EVAAKKMLKK PDKVQKNAVH SNIRSLVSTP 420 CPGAGAKKVK KIVIKKIVRK INGKGNQNST PVVSEKRDGI DANACEKEEG EITTSSFEKD 480 VISAHDPIAV SDTAGFGNAV NDQKQKNTNF TNPSGRNAAS ANGSMEIPDP PNGSGSAHPG 540 KEEVLSPKNP VDNSNASLVV EPIEVLEKSG TEHPRKEHDM SSIGSGVNDA FADANNHTQK 600 EVGEMNVAVA INSVRVSDAR EVPRCDDSSM EESKVPKDVD ANNAVCMDGV ASNCDTTEVC 660 GNEDARRECG KKLIGINDEK AFLLNNSARS SSTSDTCMTA VEGAQKKEGI ILTGSSEKSI 720 GFLGDSVGTH RTTEFGASKD APNEGDDMPS HPSEKDFMSL NSCGGLNYTE VSEKEDIQEK 780 EDRVPMESIV ACTSSGNEDI QVNEGRKPME LSEANAFSGS GDSQGKECRI PMGSSETNTS 840 SVNHVNASNE KDFSLSEDTQ KKESHRPIES CENTTFEIMH HEEAPSTEEV ITGVSLGRKV 900 AEGPTRSNER CSGARGNSAT TLKFGLACAT EDNQMEDLLN NRTALNETDD PLDAEDSPVF 960 VPPSSRNVES TYASPLYDPM EDSTSDGILN IGLGRNTTSK AAELLDLHRD HISSENDSLI 1020 HSRGTSSVSG NREQSVPTAL TLGSNIYFSS AETDDRPEER HELVVEGQQG LTVETTSKLD 1080 SPGKIEVLNG AGFISTGIQN WLSLPPSINS MEMSGQFLNN GFTVSKGRLG LDQSMDDATS 1140 VSQDHDIAQD MDQRGSEDAF FSQDHSIRLC GSNLPHSHLL APKESSMNGE DQSGIVLTGL 1200 HPINSVNVLG HYGYQTDDIP VDNLNKLPSA LESSDAMDAD QVSSQVCVNP DHTNDSNTEN 1260 AGVESNAKQD LLSSWIEAIV SEAKKEHPPC KSTPLTVGLP DKLLEPKDSD RKTLLETVVP 1320 SAVKSPQINF ASSTLQKVAP KQVTLPSSSR EPTRANQNAR HRTWHRGNIA SSSSSLHASQ 1380 PLGLPPKLPP KKNDKAQNSY IRKGNALIRN PSNGNHPHSS TGHDTQNKLN KPVVRRSMNF 1440 VRKADTKDLA NSNISVERPK TPPLPLHTKS SCPTTLLEPL SQTLQKQHGH DAEKEDLTGQ 1500 PKSGVDNSSI KSAQKSEPSD PSKVVYVRPK SNQLVAAQRQ HPIDLVNSPT DKILSLQAPI 1560 ASDLYLKKRK NQIVLSSCSP SDGLSTKETL PAENSNSEEK KDLMIACSIS GIPGVKDRPQ 1620 KALQTTNNVG RFSHVWTLNG QQPQRKGFMG SSHMNAFPRI LPWKRKIFCK NFRSSHMSNV 1680 SSIRIVRKLL QTRKRDMIYT VSTDGFSLRK SGVLSVGGSS LKWSRSLEKR SQKVNKEATL 1740 ALAEVERRKR EKRKRQSLHD KGDHQFESVT GNQLRNSCQS SSDLRKPSTC NEYVRVSKGN 1800 QLVRNPKNVI RMLASDKVRW SLHTVRSRLA KKQQYCQFFT RFGECKKPRG KCPYIHDRAK 1860 VTICTKFLKG LCSNTSCKLT HKVLPERMPD CSYFLRGLCT NIACPYRHVK VNLNAPVCED 1920 FLKGYCAYGD ECHKKHSYVC PVFEATGECP QGSRCKLHHP KSKVKSKSRR PDFLQNSSWG 1980 RYFDASIDHQ DETRKVSLDE DEREKPQRVF SDGDLGFISL DDDADEDVTA LDASDDIPLM 2040 ELDSGDLSAQ TDNLDALIKP LRIMRTARV

Sequence ? help Back to Top

Protein Sequence Length: 2069 aa Download sequence

MDPPPPFDHP LHRRHYSDHH HFPPGGSGGS GGAASAAARS RYEYGGGGGG GYESHSHHQY  60
HLPDHHHHHH HPPPRVQHHH HHHHQQLPAP TPPPPPPPPL PQHRLEPPPP HYGFPPRGHP  120
DAYSPPPYHD PSPHHHYHRH GGDDFLPADE IRRVGGGHHH HHHHPQLQQL LPWEEAEEER  180
RRYGGATQQL RLSPSGPRKR QRGAVHDADV ESTSSSGPPP RRQRQQPHPD YALDDSFVDR  240
NNAHPGYMVH EGFSIHSDSK VSRKIQMPTQ MALPGSPHGT SAGYARRAPQ KVAPSRVSVW  300
HRIEENPAMY EPSSPPPHMP KEVHVSPCKS NNVAPASKEL ASVISVDCRG KSADGNDGDS  360
NTGTKKNPVK KNEKVLASVL VKPPMEPKEK EVAAKKMLKK PDKVQKNAVH SNIRSLVSTP  420
CPGAGAKKVK KIVIKKIVRK INGKGNQNST PVVSEKRDGI DANACEKEEG EITTSSFEKD  480
VISAHDPIAV SDTAGFGNAV NDQKQKNTNF TNPSGRNAAS ANGSMEIPDP PNGSGSAHPG  540
KEEVLSPKNP VDNSNASLVV EPIEVLEKSG TEHPRKEHDM SSIGSGVNDA FADANNHTQK  600
EVGEMNVAVA INSVRVSDAR EVPRCDDSSM EESKVPKDVD ANNAVCMDGV ASNCDTTEVC  660
GNEDARRECG KKLIGINDEK AFLLNNSARS SSTSDTCMTA VEGAQKKEGI ILTGSSEKSI  720
GFLGDSVGTH RTTEFGASKD APNEGDDMPS HPSEKDFMSL NSCGGLNYTE VSEKEDIQEK  780
EDRVPMESIV ACTSSGNEDI QVNEGRKPME LSEANAFSGS GDSQGKECRI PMGSSETNTS  840
SVNHVNASNE KDFSLSEDTQ KKESHRPIES CENTTFEIMH HEEAPSTEEV ITGVSLGRKV  900
AEGPTRSNER CSGARGNSAT TLKFGLACAT EDNQMEDLLN NRTALNETDD PLDAEDSPVF  960
VPPSSRNVES TYASPLYDPM EDSTSDGILN IGLGRNTTSK AAELLDLHRD HISSENDSLI  1020
HSRGTSSVSG NREQSVPTAL TLGSNIYFSS AETDDRPEER HELVVEGQQG LTVETTSKLD  1080
SPGKIEVLNG AGFISTGIQN WLSLPPSINS MEMSGQFLNN GFTVSKGRLG LDQSMDDATS  1140
VSQDHDIAQD MDQRGSEDAF FSQDHSIRLC GSNLPHSHLL APKESSMNGE DQSGIVLTGL  1200
HPINSVNVLG HYGYQTDDIP VDNLNKLPSA LESSDAMDAD QVSSQVCVNP DHTNDSNTEN  1260
AGVESNAKQD LLSSWIEAIV SEAKKEHPPC KSTPLTVGLP DKLLEPKDSD RKTLLETVVP  1320
SAVKSPQINF ASSTLQKVAP KQVTLPSSSR EPTRANQNAR HRTWHRGNIA SSSSSLHASQ  1380
PLGLPPKLPP KKNDKAQNSY IRKGNALIRN PSNGNHPHSS TGHDTQNKLN KPVVRRSMNF  1440
VRKADTKDLA NSNISVERPK TPPLPLHTKS SCPTTLLEPL SQTLQKQHGH DAEKEDLTGQ  1500
PKSGVDNSSI KSAQKSEPSD PSKVVYVRPK SNQLVAAQRQ HPIDLVNSPT DKILSLQAPI  1560
ASDLYLKKRK NQIVLSSCSP SDGLSTKETL PAENSNSEEK KDLMIACSIS GIPGVKDRPQ  1620
KALQTTNNVG RFSHVWTLNG QQPQRKGFMG SSHMNAFPRI LPWKRKIFCK NFRSSHMSNV  1680
SSIRIVRKLL QTRKRDMIYT VSTDGFSLRK SGVLSVGGSS LKWSRSLEKR SQKVNKEATL  1740
ALAEVERRKR EKRKRQSLHD KGDHQFESVT GNQLRNSCQS SSDLRKPSTC NEYVRVSKGN  1800
QLVRNPKNVI RMLASDKVRW SLHTVRSRLA KKQQYCQFFT RFGECKKPRG KCPYIHDRAK  1860
VTICTKFLKG LCSNTSCKLT HKVLPERMPD CSYFLRGLCT NIACPYRHVK VNLNAPVCED  1920
FLKGYCAYGD ECHKKHSYVC PVFEATGECP QGSRCKLHHP KSKVKSKSRR PDFLQNSSWG  1980
RYFDASIDHQ DETRKVSLDE DEREKPQRVF SDGDLGFISL DDDADEDVTA LDASDDIPLM  2040
ELDSGDLSAQ TDNLDALIKP LRIMRTARV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1747	1752	RRKREK

Link Out ? help Back to Top
Ensembl	ONIVA06G26100.1