PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G25000.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 280aa    MW: 28880.8 Da    PI: 9.6014
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G25000.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-0685110227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C+ +     Ck G++C+FaHg+
  ONIVA06G25000.2  85 KTRMCNKYNTAEGCKWGSKCHFAHGE 110
                      89**********************96 PP

2zf-CCCH36.77.1e-12245270127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + G C +GdrC+FaHg+
  ONIVA06G25000.2 245 FKTKLCENFNK-GSCTFGDRCHFAHGE 270
                      69*********.*************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MEAGGGKRAA PEGTNGAAKR AREIVVEGTS GCPFGSSCHF LHNFPGGYQA AAKMTSHGGT  60
AVAAPPGRMP LGPGAPNGPP TSSVKTRMCN KYNTAEGCKW GSKCHFAHGE RELGKPMLLD  120
NSMPHPMGSM PFEAPPMPGP DIVPPSTFGA SATAKISVDA SLAGGIIGKG GTNTKHISRM  180
TGAKLAIRDN ESNPNLKNIE LEGTFDQIKH ASAMVTELIV RISGNAPPAK NPGKGSHAGG  240
PGSNFKTKLC ENFNKGSCTF GDRCHFAHGE SELRKPPAAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-49C3H family protein