PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G25000.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 295aa MW: 30423.6 Da PI: 10.0301

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G25000.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.7e-07	34	58	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H ONIVA06G25000.1 34 KLKPCTKFFSTSGCPFGSSCHFLHN 58 6689********************7 PP
2	zf-CCCH	20.1	1.1e-06	100	125	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + Ck G++C+FaHg+ ONIVA06G25000.1 100 KTRMCNKYNTAEGCKWGSKCHFAHGE 125 89**********************96 PP
3	zf-CCCH	36.6	7.6e-12	260	285	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C +GdrC+FaHg+ ONIVA06G25000.1 260 FKTKLCENFNK-GSCTFGDRCHFAHGE 285 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MEAGGGKRAA PEGTNGAAKR ARASESSQVG VGSKLKPCTK FFSTSGCPFG SSCHFLHNFP 60 GGYQAAAKMT SHGGTAVAAP PGRMPLGPGA PNGPPTSSVK TRMCNKYNTA EGCKWGSKCH 120 FAHGERELGK PMLLDNSMPH PMGSMPFEAP PMPGPDIVPP STFGASATAK ISVDASLAGG 180 IIGKGGTNTK HISRMTGAKL AIRDNESNPN LKNIELEGTF DQIKHASAMV TELIVRISGN 240 APPAKNPGKG SHAGGPGSNF KTKLCENFNK GSCTFGDRCH FAHGESELRK PPAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	4e-62	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G25000.1