PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G25000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 295aa    MW: 30423.6 Da    PI: 10.0301
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G25000.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-073458226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k ++C  f+ t  C++G++C+F H 
  ONIVA06G25000.1 34 KLKPCTKFFSTSGCPFGSSCHFLHN 58
                     6689********************7 PP

2zf-CCCH20.11.1e-06100125227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C+ +     Ck G++C+FaHg+
  ONIVA06G25000.1 100 KTRMCNKYNTAEGCKWGSKCHFAHGE 125
                      89**********************96 PP

3zf-CCCH36.67.6e-12260285127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + G C +GdrC+FaHg+
  ONIVA06G25000.1 260 FKTKLCENFNK-GSCTFGDRCHFAHGE 285
                      69*********.*************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MEAGGGKRAA PEGTNGAAKR ARASESSQVG VGSKLKPCTK FFSTSGCPFG SSCHFLHNFP  60
GGYQAAAKMT SHGGTAVAAP PGRMPLGPGA PNGPPTSSVK TRMCNKYNTA EGCKWGSKCH  120
FAHGERELGK PMLLDNSMPH PMGSMPFEAP PMPGPDIVPP STFGASATAK ISVDASLAGG  180
IIGKGGTNTK HISRMTGAKL AIRDNESNPN LKNIELEGTF DQIKHASAMV TELIVRISGN  240
APPAKNPGKG SHAGGPGSNF KTKLCENFNK GSCTFGDRCH FAHGESELRK PPAAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-62C3H family protein