PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G24530.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 507aa    MW: 52165.8 Da    PI: 7.2429
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G24530.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.11.4e-921175032374
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      ++lLl+cA+ ++ gdl +a+++ + +    asp+gd+  Rla +f++ALa r+  +  +  + +    ++      +  a+ +f+++ P+l+f+
  ONIVA06G24530.1 117 RDLLLACADLLQRGDLPAARRAAEIVLAAaASPRGDAADRLAYHFARALALRVDAK-AGHGHVVVGGGAA---RPASSGAYLAFNQIAPFLRFA 206
                      689*****************9999876665***********************993.3334444333333...4566778999*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.... 181
                      hltaNqaIleav+g++rvHi+D+d+ +G+QWp+Llqa+a+R+    gpp++R+Tg g+    ++++l +tg+rL+ fA+++++pf+f++l    
  ONIVA06G24530.1 207 HLTANQAILEAVDGARRVHILDLDAVHGVQWPPLLQAIAERAdpaLGPPEVRVTGAGA----DRDTLLRTGNRLRAFARSIHLPFHFTPLllsc 296
                      ******************************************66666***********....9***************************9999 PP

             GRAS 182 ...............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse......sFl 254
                                     +a++ ++     L+++p+E+laVn+v+ lh+l       ++e  ++Lk vk +sP vv+++e+ea  +++      ++ 
  ONIVA06G24530.1 297 attaphhvagtstgaAATASTAAAATGLEFHPDETLAVNCVMFLHNLA-----GHDELAAFLKWVKAMSPAVVTIAEREAGGGGGggdhidDLP 385
                      9999988877776644444555578889*******************8.....2233567*******************9996655788889** PP

             GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347
                      +r+  a+++ysa+f++lea++p+ s+er  vE+e+lgrei+ +v  +g +     +  e+W  + ++aGF + pls +a++qa+lllr ++ s+
  ONIVA06G24530.1 386 RRVGVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGREIEAAVGPSGGR---WWRGIERWGGAARAAGFAARPLSAFAVSQARLLLRLHYpSE 476
                      *********************************************99998...78899************************************ PP

             GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                      gy v+e +g+ +lgW++rpL+svSaW+
  ONIVA06G24530.1 477 GYLVQEARGACFLGWQTRPLLSVSAWQ 503
                      **************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    
MSCQGSCNCK PRCWTCTLAL PIKPALLRCS LSSSPLAAAA ATFSGSSPSF SGGGGGDDDG  60
YGGGDGMLRS LHSSSSSDTD NNSGGCKNNG GGGGEAAAAV EGGGDQRAVA AAAPSTRDLL  120
LACADLLQRG DLPAARRAAE IVLAAAASPR GDAADRLAYH FARALALRVD AKAGHGHVVV  180
GGGAARPASS GAYLAFNQIA PFLRFAHLTA NQAILEAVDG ARRVHILDLD AVHGVQWPPL  240
LQAIAERADP ALGPPEVRVT GAGADRDTLL RTGNRLRAFA RSIHLPFHFT PLLLSCATTA  300
PHHVAGTSTG AAATASTAAA ATGLEFHPDE TLAVNCVMFL HNLAGHDELA AFLKWVKAMS  360
PAVVTIAERE AGGGGGGGDH IDDLPRRVGV AMDHYSAVFE ALEATVPPGS RERLAVEQEV  420
LGREIEAAVG PSGGRWWRGI ERWGGAARAA GFAARPLSAF AVSQARLLLR LHYPSEGYLV  480
QEARGACFLG WQTRPLLSVS AWQPSSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.12e-67GRAS family protein