PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G24230.5

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 511aa MW: 56295.9 Da PI: 4.618

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G24230.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59	1.1e-18	78	125	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l ++v+ +G g+W+++ r g++R++k+c++rw ++l ONIVA06G24230.5 78 KGPWTPDEDKRLREYVEAHGEGNWNRVQRNAGLNRCGKSCRLRWANHL 125 79******************************************9986 PP
2	Myb_DNA-binding	42.2	1.9e-13	131	174	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+e +++++ lG++ W++ a+ ++ gRt++++k++w++ ONIVA06G24230.5 131 KGPFSKEEEEMIIKLHLWLGNK-WAKMANSLP-GRTDNEIKNFWNT 174 79******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MEGSSPMEEE EEAARLAGSQ GESPAMLHPN GDGDGDGGDD EGDASGGEEE QGGVARAGVR 60 RRGGGGRVRV RGRIPLKKGP WTPDEDKRLR EYVEAHGEGN WNRVQRNAGL NRCGKSCRLR 120 WANHLKPDLK KGPFSKEEEE MIIKLHLWLG NKWAKMANSL PGRTDNEIKN FWNTRCKRIQ 180 RTGEPLYPKE FNHFKLTDLE VMNCESPDES RAKKRTNEVL QGNGQSYKEV FFDNLDYSRP 240 ENYIRPNCVT PNSLPVDATS PFGSAIATQD QSVPFGSAIV SGHPILDGNF STSGTIQRPM 300 NVELPSLQYP NYDFNNNNAW SYHDPLGHPI DQVDFGSLRS EYLSPNNNGL LDALVHGGHG 360 QGELANSQGS FDACFPRVQC NQVIQSNAFS LSSSFPIIGD DLLENSCHAF VGINNNASSL 420 FLDSQPPPLV DPTFWRHDVS LEPNLPVYCQ FNEELPPSNE QFAKDADDAF GHGGLSDETN 480 LAAAGQGDEH DLENPWASMP GACDIPDFPS E

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MEGSSPMEEE EEAARLAGSQ GESPAMLHPN GDGDGDGGDD EGDASGGEEE QGGVARAGVR  60
RRGGGGRVRV RGRIPLKKGP WTPDEDKRLR EYVEAHGEGN WNRVQRNAGL NRCGKSCRLR  120
WANHLKPDLK KGPFSKEEEE MIIKLHLWLG NKWAKMANSL PGRTDNEIKN FWNTRCKRIQ  180
RTGEPLYPKE FNHFKLTDLE VMNCESPDES RAKKRTNEVL QGNGQSYKEV FFDNLDYSRP  240
ENYIRPNCVT PNSLPVDATS PFGSAIATQD QSVPFGSAIV SGHPILDGNF STSGTIQRPM  300
NVELPSLQYP NYDFNNNNAW SYHDPLGHPI DQVDFGSLRS EYLSPNNNGL LDALVHGGHG  360
QGELANSQGS FDACFPRVQC NQVIQSNAFS LSSSFPIIGD DLLENSCHAF VGINNNASSL  420
FLDSQPPPLV DPTFWRHDVS LEPNLPVYCQ FNEELPPSNE QFAKDADDAF GHGGLSDETN  480
LAAAGQGDEH DLENPWASMP GACDIPDFPS E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	1e-55	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G24230.5