PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G14620.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 364aa MW: 40973.6 Da PI: 8.1798

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G14620.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28	3.8e-09	31	51	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ ONIVA06G14620.1 31 VCTFYQK-GSCSYGSRCRYDHV 51 5****.***********7 PP
2	zf-CCCH	24.7	3.9e-08	147	168	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa++G C+yG+ C+ +Hg ONIVA06G14620.1 147 PICS-FAAGGNCPYGEECPQMHG 168 6788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MSTKRLNKGS AGVACVYFAF LHILVLRTLQ VCTFYQKGSC SYGSRCRYDH VKVSRNPTVA 60 PPPSSSTTTR ASSSLQPLSF GRPHHVGYQA DSSNPRQQIS MDVLAHSGSK PVWRNDFQHE 120 SVLEDGIDWS ISPTVQNQTT LSPADLPICS FAAGGNCPYG EECPQMHGDL CTTCGKMCLH 180 PYRPDEREEH TKLCEKNHKR LESLKRSQEI ECSVCLDRVL SKPTAAERKF GLLSECDHPF 240 CISCIRNWRN NSPTSGMDVN SALRACPICR KLSYYVIPSV LWYFSKEEKL EIIDNYKAKL 300 KSIDCKYFDF GTGTCPFGSS CFYKHAYRDG RLEEVILRHL DADDGSTVIA KNIRLSDFLS 360 RLHL

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MSTKRLNKGS AGVACVYFAF LHILVLRTLQ VCTFYQKGSC SYGSRCRYDH VKVSRNPTVA  60
PPPSSSTTTR ASSSLQPLSF GRPHHVGYQA DSSNPRQQIS MDVLAHSGSK PVWRNDFQHE  120
SVLEDGIDWS ISPTVQNQTT LSPADLPICS FAAGGNCPYG EECPQMHGDL CTTCGKMCLH  180
PYRPDEREEH TKLCEKNHKR LESLKRSQEI ECSVCLDRVL SKPTAAERKF GLLSECDHPF  240
CISCIRNWRN NSPTSGMDVN SALRACPICR KLSYYVIPSV LWYFSKEEKL EIIDNYKAKL  300
KSIDCKYFDF GTGTCPFGSS CFYKHAYRDG RLEEVILRHL DADDGSTVIA KNIRLSDFLS  360
RLHL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	207	ESLKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-132	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G14620.1