PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G13720.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 432aa MW: 47604.4 Da PI: 7.0775

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G13720.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	114	135	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k+F++ ++ H+r+H ONIVA06G13720.1 114 ECQVCHKRFKNDKSMFGHLRSH 135 6*******************99 PP
2	zf-C2H2	11.5	0.0009	285	307	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ Fs++ L H+ H ONIVA06G13720.1 285 YMCKHCNEEFSTHQALGGHMAGH 307 89******************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MSGCSWLCSL VILQAVCSAC WQVAGANSLR LAVGQIGGVF VYLQDPNLMS RRARDELVDG 60 SCSGDEDLAD HGAWPQPGGG AGGDHGGVPR GGEAGEAEAD VDVDGDGGSA GDVECQVCHK 120 RFKNDKSMFG HLRSHPNRGY KGATPPLKMS STPSSSSPVI PAGSPPPQPP PSSSSSLRPV 180 GDSNSSMPTP GISLTTYEKL AACVMLTLRR RYDRDQRQLQ APPKLERAGA GDQLATNMVE 240 GAEGSSRAIV RDEHEAWRRK KGKRKLKEPR EEERKVKKEK KRHPYMCKHC NEEFSTHQAL 300 GGHMAGHHKE KRILLKEKQR ERSLVLEKEP ERSHHLMEEK HPERGLILEK KQLERSSIVL 360 KEKQPDHNLI LEEEQPEVVY QDKIDQTMNW QKTERNEGVS YLGGGSNTAP IAQEDSRPPF 420 GFDLNVEAPE QE

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MSGCSWLCSL VILQAVCSAC WQVAGANSLR LAVGQIGGVF VYLQDPNLMS RRARDELVDG  60
SCSGDEDLAD HGAWPQPGGG AGGDHGGVPR GGEAGEAEAD VDVDGDGGSA GDVECQVCHK  120
RFKNDKSMFG HLRSHPNRGY KGATPPLKMS STPSSSSPVI PAGSPPPQPP PSSSSSLRPV  180
GDSNSSMPTP GISLTTYEKL AACVMLTLRR RYDRDQRQLQ APPKLERAGA GDQLATNMVE  240
GAEGSSRAIV RDEHEAWRRK KGKRKLKEPR EEERKVKKEK KRHPYMCKHC NEEFSTHQAL  300
GGHMAGHHKE KRILLKEKQR ERSLVLEKEP ERSHHLMEEK HPERGLILEK KQLERSSIVL  360
KEKQPDHNLI LEEEQPEVVY QDKIDQTMNW QKTERNEGVS YLGGGSNTAP IAQEDSRPPF  420
GFDLNVEAPE QE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	258	266	RRKKGKRKL
2	259	267	RRKKGKRKL

Link Out ? help Back to Top
Ensembl	ONIVA06G13720.1