PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G07790.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

GRF

Protein Properties

Length: 500aa MW: 53296.3 Da PI: 8.6867

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G07790.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.8	4.5e-24	86	129	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++ +k+CE+H+hrg++rsrk++e ONIVA06G07790.1 86 DPEPGRCRRTDGKKWRCSREAYGESKYCEKHMHRGKNRSRKPVE 129 79***************************************997 PP
2	WRC	24.5	4.7e-08	310	329	25	44
WRC 25 kklCErHlhrgrsrsrkske 44 +k+CE+H+hrg++rsrk++e ONIVA06G07790.1 310 SKYCEKHMHRGKNRSRKPVE 329 79***************997 PP
3	QLQ	61.7	2e-21	10	44	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTa+Q+q+L++Q+l+yKy+aa++PvPp+Ll++++ ONIVA06G07790.1 10 LFTATQWQELEHQALIYKYMAAGAPVPPDLLLHLR 44 5******************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MAGGGSGRCL FTATQWQELE HQALIYKYMA AGAPVPPDLL LHLRHRAAAA AAADVDTVPS 60 LAFPPHHLGW GCYGAAAAQY GRRVEDPEPG RCRRTDGKKW RCSREAYGES KYCEKHMHRG 120 KNRSRKPVEM PPPAAAAVYR PSALSISPPP HDADAPSYGA GAGAPLQLHL DSFHASTSPP 180 PSYHITPLFP VSGGYGWSSS KEHCLTLGGV ADLSLNKPAD HHHHDATSAT TTEKPLRDDG 240 RTLWDSTQLS ISIPTAAASS PDLAIASAAS RYHNNVTHGA VGQSGQDAWR RLTSRMGSPN 300 GLGGRRRPLS KYCEKHMHRG KNRSRKPVEM PPPAAAAVYR PSALSISPPP HDADAPSYGA 360 GAGAPLQLHL DSFHASTSPP PSYHRYAHTS SAPLFPSSAA GYGGGWSLSK EHCLTLGGAA 420 ADLSLDKPAD HHHDATSATT EKPLRRFFDE WPRSDDGRTP WDGTQLSISI PTAVAASPDL 480 AIAGAASRYH SNGDHLRTSE

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MAGGGSGRCL FTATQWQELE HQALIYKYMA AGAPVPPDLL LHLRHRAAAA AAADVDTVPS  60
LAFPPHHLGW GCYGAAAAQY GRRVEDPEPG RCRRTDGKKW RCSREAYGES KYCEKHMHRG  120
KNRSRKPVEM PPPAAAAVYR PSALSISPPP HDADAPSYGA GAGAPLQLHL DSFHASTSPP  180
PSYHITPLFP VSGGYGWSSS KEHCLTLGGV ADLSLNKPAD HHHHDATSAT TTEKPLRDDG  240
RTLWDSTQLS ISIPTAAASS PDLAIASAAS RYHNNVTHGA VGQSGQDAWR RLTSRMGSPN  300
GLGGRRRPLS KYCEKHMHRG KNRSRKPVEM PPPAAAAVYR PSALSISPPP HDADAPSYGA  360
GAGAPLQLHL DSFHASTSPP PSYHRYAHTS SAPLFPSSAA GYGGGWSLSK EHCLTLGGAA  420
ADLSLDKPAD HHHDATSATT EKPLRRFFDE WPRSDDGRTP WDGTQLSISI PTAVAASPDL  480
AIAGAASRYH SNGDHLRTSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	5e-40	GRF family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G07790.1