PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G05620.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 474aa MW: 52284.8 Da PI: 7.9478

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G05620.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.6	1.2e-06	203	226	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C Cg++F+++ +L+rH r H ONIVA06G05620.1 203 YSCAVCGRRFPTRPDLTRHFRQlH 226 99*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MEAEWHIPSS PPNPKSASRL LPSLSITTPR PTPNQTPCGR DLAALAMPPP LSFLHLAANP 60 TPLHASPLRR ARLRHRLSLR TDHPSRRAVA SASASAGENP STPGGPIADV EMVRGKDGVW 120 TARPPTVVVL WDLDNKPPRG PPFPAATALR DAASLLGRVV SVSAFANRHA FSHVPAWVAD 180 ERRERRAMDR AERAGAASPP VPYSCAVCGR RFPTRPDLTR HFRQLHQRER NKKLSRLRSL 240 KGKKRQKFRE RFISGNTKYD DAARELLTPK VGYGLAAELR RAGVHVRTVS DKPQAADHAL 300 KRQVKHSVAC GVDWLVLVSD DSDFTDTVRK ARAADLRTVV VGDGCRALGS VADIWLPWDR 360 VENGEVDEDM LRNGTHMGFR DEEEDEQDDD EFIVDWDTSD LDGVVDDIVA TRTKLFGATT 420 MSAFADEEIM DGILGVGING GDMLWSSDDE DEDGLVLYCY SANQKASSHR HKHS

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MEAEWHIPSS PPNPKSASRL LPSLSITTPR PTPNQTPCGR DLAALAMPPP LSFLHLAANP  60
TPLHASPLRR ARLRHRLSLR TDHPSRRAVA SASASAGENP STPGGPIADV EMVRGKDGVW  120
TARPPTVVVL WDLDNKPPRG PPFPAATALR DAASLLGRVV SVSAFANRHA FSHVPAWVAD  180
ERRERRAMDR AERAGAASPP VPYSCAVCGR RFPTRPDLTR HFRQLHQRER NKKLSRLRSL  240
KGKKRQKFRE RFISGNTKYD DAARELLTPK VGYGLAAELR RAGVHVRTVS DKPQAADHAL  300
KRQVKHSVAC GVDWLVLVSD DSDFTDTVRK ARAADLRTVV VGDGCRALGS VADIWLPWDR  360
VENGEVDEDM LRNGTHMGFR DEEEDEQDDD EFIVDWDTSD LDGVVDDIVA TRTKLFGATT  420
MSAFADEEIM DGILGVGING GDMLWSSDDE DEDGLVLYCY SANQKASSHR HKHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	3e-92	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G05620.1