PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G04560.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

ERF

Protein Properties

Length: 397aa MW: 42744.2 Da PI: 4.9318

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G04560.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.1	1.4e-15	313	364	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++ k+grW A+I + + ++lg+f t+eeAa+a++ a+ +++g ONIVA06G04560.1 313 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 364 57**************9995.....234**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MESSLKEEKA AGESGDDEKA ERSSPINLNS LPATAACAAA APDEDGLHSA VESGAKDSNT 60 SKGVESLGTG HKKIPKREVV DEVDVQTCAE GKNDSVVPSS SKNPINDKNA KANVAENGQS 120 ADGIPEDQRV TILSVVKKDE PADDVRDSVN PVTVVGYRDE KGGTSGTAGT TAVRPAGTRS 180 SSFHGVTSQI IPVLSLEGGT HQSSTDSAGI DGVENMKLIC GTVRAEWKGG EEREGKGLFF 240 SLNISYYAGS YDTEEKAARS YDVAALKYWG QNTKLNFSVS EYERELEDIR DMSREECVTY 300 LRRRSSCFSR GASIYRGVTR RQKDGRWQAR IGLVAGTRDI YLGTFKTEEE AAEAYDIAAI 360 EIRGKNAVTN FDRSNYMEKG MHCIEGAGLK LLASKPE

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MESSLKEEKA AGESGDDEKA ERSSPINLNS LPATAACAAA APDEDGLHSA VESGAKDSNT  60
SKGVESLGTG HKKIPKREVV DEVDVQTCAE GKNDSVVPSS SKNPINDKNA KANVAENGQS  120
ADGIPEDQRV TILSVVKKDE PADDVRDSVN PVTVVGYRDE KGGTSGTAGT TAVRPAGTRS  180
SSFHGVTSQI IPVLSLEGGT HQSSTDSAGI DGVENMKLIC GTVRAEWKGG EEREGKGLFF  240
SLNISYYAGS YDTEEKAARS YDVAALKYWG QNTKLNFSVS EYERELEDIR DMSREECVTY  300
LRRRSSCFSR GASIYRGVTR RQKDGRWQAR IGLVAGTRDI YLGTFKTEEE AAEAYDIAAI  360
EIRGKNAVTN FDRSNYMEKG MHCIEGAGLK LLASKPE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	302	323	RRRSSCFSRGASIYRGVTRRQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	4e-48	AP2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G04560.1