PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G04040.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 711aa    MW: 74137 Da    PI: 5.9533
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G04040.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.42e-813547103374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a + g+   a+++Larl+++  p g+p+ R a+y++ AL   la+      +  +++ ts+ +++ +l+a+k fs++sP+l+f+++
  ONIVA06G04040.1 354 DELAAAAKATEVGNSIGAREILARLNQQLPPIGKPFLRSASYLKDALLLALAD-----GHHAATRLTSPLDVALKLTAYKSFSDLSPVLQFANF 442
                      7899*************************************************.....6666777888888*********************** PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      t  qa+l+++++   +++ +iDfd++ G+QW+++lq+La R      + p+l++T+++s++s++  el+ t+++L++fA+ lg+pfefn++   
  ONIVA06G04040.1 443 TVTQALLDEIASTtaSCIRVIDFDLGVGGQWASFLQELAHRCgsggVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAI--- 533
                      ********999887799************************96544459*****************************************9... PP

             GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +l+++++ eL   + +E++aV+l +              + +++L+lvk+l Pk+vv ++  +d+++ +F ++fl++l+ +  l++sl+a  ++
  ONIVA06G04040.1 534 NLDAFDPMELIAPTaDEVVAVSLPVGCSART--------PLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFSQHFLNCLQSCLCLLESLDAA-GT 618
                      999999999966557**********877776........5677*********************************************999.89 PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      ++++ +k+Er+l++++++++v  + ++      ++  Wr  l++aGF p pls+ a++qa++ll++v+++g++ve++ + l l+W++ +LvsvS
  ONIVA06G04040.1 619 DADAVSKIERFLIQPRVEDAVLGRRRA-----DKAIAWRTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRGELVSVS 707
                      99*******************977665.....88899********************************************************* PP

             GRAS 372 aWr 374
                      aWr
  ONIVA06G04040.1 708 AWR 710
                      **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    
MRAAPFSADG NGAAELAGSI AALLWPEDKG GGGGGGGGSL LVEPRSVLDC RGSPSPPNST  60
STLSSSHGSG AADSISTGVA AVSESSAAAA EATRWAAPGE HGGGGGGELP PIPGALDVGF  120
VAEESWDAML GDAAAAAGQE QTFLNWIMAA PGDMEPQAPG LSQQQLLANA AGFGFPLQHH  180
PGGVSSPAAL ASDLSSSGRR SLTSSSGSNS KATSAFGLLS PEAALQPPPA TTAPFHNGAD  240
MKPPLLGLPS PTLLLNQHQP TPASTLFMPF PSFSDHQQQP LLQPPPKRHH SVPDNLFLLH  300
NQPQPPPPAP AQCLPFPTLH STVPFQLQPS MQHPRNAMKS TAAAAAAQQQ HLLDELAAAA  360
KATEVGNSIG AREILARLNQ QLPPIGKPFL RSASYLKDAL LLALADGHHA ATRLTSPLDV  420
ALKLTAYKSF SDLSPVLQFA NFTVTQALLD EIASTTASCI RVIDFDLGVG GQWASFLQEL  480
AHRCGSGGVS LPMLKLTAFV SAASHHPLEL HLTQDNLSQF AADLGIPFEF NAINLDAFDP  540
MELIAPTADE VVAVSLPVGC SARTPLPAML QLVKQLAPKI VVAIDYGSDR SDLPFSQHFL  600
NCLQSCLCLL ESLDAAGTDA DAVSKIERFL IQPRVEDAVL GRRRADKAIA WRTVLTSAGF  660
APQPLSNLAE AQADCLLKRV QVRGFHVEKR GAGLALYWQR GELVSVSAWR C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.17e-83GRAS family protein