PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G03250.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 308aa MW: 32084.9 Da PI: 9.1489

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G03250.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.8	2.1e-19	114	168	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee+F+ +++++ +++ LA++lgL rqV vWFqNrRa+ k ONIVA06G03250.1 114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 168 678899***********************************************98 PP
2	HD-ZIP_I/II	124.8	3.9e-40	114	204	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke ++Lr +lk ONIVA06G03250.1 114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR-ALK 204 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MMDLGLSLGL GLASQGSLTS STTTTSSPGA GSSSPWAAAL NSIVGDVRRD QAAAHAAAAV 60 GVGVGGEEMY QGRASTSPDS AAALSSASGK RERELERSGS GVDDDDGADG AGGRKKLRLS 120 KDQAAVLEEC FKTHSTLNPK QKVALANRLG LRPRQVEVWF QNRRARTKLK QTEVDCEYLK 180 RWCERLADEN KRLEKELADL RALKAAPSPA SASAMQPSSS AAATLTMCPS CRRVATAGAP 240 HQPNHQQCHP KSNTTISSSS TAAAAVAVAG GNVLPSHCQF FPAAAAAADR TSQSTWNAAA 300 PLVTRELF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	171	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	5e-51	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G03250.1