PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G01910.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 589aa    MW: 63029.7 Da    PI: 6.3877
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G01910.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.71.6e-11221456626374
             GRAS  26 rlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkfshltaNqaIleavegeervHii 115
                       l+ +asp+g +pm+R+aayfteALa r++r++++++++ pp+e +++     ++ ++al++++ ++Pi++f h+t N+ +l+++eg+ervH+i
  ONIVA06G01910.1 214 ALELMASPAGpTPMHRVAAYFTEALALRVVRMWPHMFDIGPPRELTDDAfggGDDDAMALRILNAITPIPRFLHFTLNERLLREFEGHERVHVI 307
                      57889*****************************************9989999***************************************** PP

             GRAS 116 DfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlq 209
                      Dfdi+qGlQWp Llq+La+R+ +p+++RiTg+g+    s++el+etg rLa++A++lg+ fef++ v++rled++l++L+vk+gE++aVn+vl+
  ONIVA06G01910.1 308 DFDIKQGLQWPGLLQSLAARAVPPAHVRITGIGE----SRQELQETGARLARVAAALGLAFEFHA-VVDRLEDVRLWMLHVKRGECVAVNCVLA 396
                      **********************************....9**************************.7*************************** PP

             GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvace 301
                      +hrll+++++l++    +L l +s+ ++++ + e+e    ns+++ +rf++al+yy+a fd++ +a+lp++s +r+k E++ ++rei+n+va e
  ONIVA06G01910.1 397 MHRLLRDDAALTD----FLGLARSTGATILLLGEHEGGGlNSGRWEARFARALRYYAAAFDAVdAAGLPEASPARAKAEEM-FAREIRNAVAFE 485
                      *********9999....*******************8777***********************9999**************.************ PP

             GRAS 302 gaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                      g er+erhe+++ Wr+r+e+  GFk++ ++e++a+q +++ r+++ d y+v+ +        ++l+l W d+pL++v+aW+
  ONIVA06G01910.1 486 GPERFERHESFAGWRRRMEDgGGFKNAGIGEREAMQGRMIARMFGPDKYTVQAHggggsgdGEALTLRWLDQPLYTVTAWT 566
                      *******************9679**********************888****77666666466677**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    
MLAGCSFSSS RHQMSTAQRF DILPCGFSKR SSRGDGAAPR VAGDARSGAT TCSFRTHPAP  60
PVTQSVSWGA KPEPGGNGNG AHRAVKRAHD EDAVEEYGPI VRAKRTRMGG DGDEVWFHQS  120
IAGTMQATAA GEGEEAEEEK VFLVPSAAAF PHGMAAAGPS LAAAKKEEYS KSPSDSSSSS  180
GTDGGSSAMM PPPQPPEFDA RNGVPAPGQA EREALELMAS PAGPTPMHRV AAYFTEALAL  240
RVVRMWPHMF DIGPPRELTD DAFGGGDDDA MALRILNAIT PIPRFLHFTL NERLLREFEG  300
HERVHVIDFD IKQGLQWPGL LQSLAARAVP PAHVRITGIG ESRQELQETG ARLARVAAAL  360
GLAFEFHAVV DRLEDVRLWM LHVKRGECVA VNCVLAMHRL LRDDAALTDF LGLARSTGAT  420
ILLLGEHEGG GLNSGRWEAR FARALRYYAA AFDAVDAAGL PEASPARAKA EEMFAREIRN  480
AVAFEGPERF ERHESFAGWR RRMEDGGGFK NAGIGEREAM QGRMIARMFG PDKYTVQAHG  540
GGGSGDGEAL TLRWLDQPLY TVTAWTPAGD GAGGSTVSAS TTASHSQQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-105GRAS family protein