PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G00010.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LSD
Protein Properties Length: 217aa    MW: 24087.4 Da    PI: 8.1257
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G00010.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD125.22.7e-082646121
          zf-LSD1  1 CggCrtlLsYPrGApsVRCal 21
                     C+gC +lL+YP+GA sV+C++
  ONIVA06G00010.3 26 CSGCCNLLMYPAGAMSVCCTV 46
                     *******************85 PP

Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MPVPLALYPT PVPFAPPNGA QSQLVCSGCC NLLMYPAGAM SVCCTVRSTV TAVPAPDMHI  60
IHSGIRNSTR VAMIVPAVRP LAKYTLELCV STPPPVAAAA MECVLDEYAT KHRISIDRFL  120
QLRIFVKVHD RFNASRIFLY MYSCSMKMLS FGVPCKEKAE YECNRLPAMI DAHLFRDYHL  180
AFWFGLFCAW GQPQDGDLHL WLPHQCRCHL GGASGLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.36e-12LSD family protein