PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G00010.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LSD | ||||||||
Protein Properties | Length: 217aa MW: 24087.4 Da PI: 8.1257 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 25.2 | 2.7e-08 | 26 | 46 | 1 | 21 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCal 21 C+gC +lL+YP+GA sV+C++ ONIVA06G00010.3 26 CSGCCNLLMYPAGAMSVCCTV 46 *******************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MPVPLALYPT PVPFAPPNGA QSQLVCSGCC NLLMYPAGAM SVCCTVRSTV TAVPAPDMHI 60 IHSGIRNSTR VAMIVPAVRP LAKYTLELCV STPPPVAAAA MECVLDEYAT KHRISIDRFL 120 QLRIFVKVHD RFNASRIFLY MYSCSMKMLS FGVPCKEKAE YECNRLPAMI DAHLFRDYHL 180 AFWFGLFCAW GQPQDGDLHL WLPHQCRCHL GGASGLP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 6e-12 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA06G00010.3 |