PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G30260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 229aa MW: 24932.8 Da PI: 4.4434 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 204 | 226 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+k+F++ + L++H + H ONIVA05G30260.1 204 SCKSCSKTFNSEMALQSHSKAkH 226 7*****************98777 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MYVKTDDQKL VIGTLSADKF PQIQFDLVFD KEFELSHTSK TANEEEEEKI IPAPRANGKV 60 EGKENEQKKQ GKTDSSASKS KAAVNDDDDD DDSDEDDSED EDLSPEDDDD DSSEDDSSED 120 DEDESDEEET PKKPETGKRK VAEIVLKTPS SDKKAKIATP SGQKTGDKKG VHVATPHPAK 180 QASKTPVNDK SKEKSPKSGG GSISCKSCSK TFNSEMALQS HSKAKHPAK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 2e-11 | C2H2 family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA05G30260.1 |