PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G28820.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 343aa MW: 37169.1 Da PI: 8.4178

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G28820.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	48.4	1.5e-15	269	294	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yGd+C+FaHg ONIVA05G28820.1 269 FKTELCNKWEETGACPYGDQCQFAHG 294 79***********************9 PP
2	zf-CCCH	23.7	8.6e-08	307	332	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt Cr +++G C+yG rC+F H+ ONIVA05G28820.1 307 YKTQVCRMVLAGGVCPYGHRCHFRHS 332 9**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MQEALLPPAH PGRFYSDFGP KPFGSGDQRL SSPNLLTNGG DLFYGCYSPF SPTRVLSPPP 60 PRRAASFSHC SSSSDSVVDD GDGAGAAAAT EHRLHLAHLA LQYQEMANRF ELCLSHLADA 120 ADEAAALRQE NAELRVANND LACRIAKFGG RQSSAIALAG DLRRLRLPKE QTVPALPPPP 180 QSPPAALMNP VAVPEKQAVL PKSISIRSTG YQKLNQGGKH RVSKPVNVGS QRVFVGIDGA 240 EGGEHKVGVK KEEPPMGGLE FEVYNQGMFK TELCNKWEET GACPYGDQCQ FAHGVAELRP 300 VIRHPRYKTQ VCRMVLAGGV CPYGHRCHFR HSITPADRFS FGH

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MQEALLPPAH PGRFYSDFGP KPFGSGDQRL SSPNLLTNGG DLFYGCYSPF SPTRVLSPPP  60
PRRAASFSHC SSSSDSVVDD GDGAGAAAAT EHRLHLAHLA LQYQEMANRF ELCLSHLADA  120
ADEAAALRQE NAELRVANND LACRIAKFGG RQSSAIALAG DLRRLRLPKE QTVPALPPPP  180
QSPPAALMNP VAVPEKQAVL PKSISIRSTG YQKLNQGGKH RVSKPVNVGS QRVFVGIDGA  240
EGGEHKVGVK KEEPPMGGLE FEVYNQGMFK TELCNKWEET GACPYGDQCQ FAHGVAELRP  300
VIRHPRYKTQ VCRMVLAGGV CPYGHRCHFR HSITPADRFS FGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	1e-58	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G28820.1