PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G27760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 148aa MW: 16693.9 Da PI: 4.8167 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.1 | 4e-10 | 14 | 38 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f+++ G C++GdrC++ H ONIVA05G27760.1 14 DRVNCPFYFKIGACRHGDRCSRLHN 38 6899********************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence |
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TVSPTIVLAN MYQRPDMITP 60 GVDAQGQPID PEKMQEHFED FYEDIYEELS KFGEVETLNV CDNLADHMIG NVYVQFREEE 120 QAVAAHNALQ GSLRRTAATV GATVILCM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44785.1 | 4e-30 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA05G27760.1 |