PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G24770.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 469aa    MW: 51929.2 Da    PI: 8.8754
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G24770.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.6e-1294146855
              AP2   8 wdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  ONIVA05G24770.1  94 RHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 146
                      799***********888855666447*************************98 PP
2AP226.81.3e-08189223138
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 
                      s+y+GV +++++grW+A+I   +   g +k+ +lg++  
  ONIVA05G24770.1 189 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSE 223
                      89****************99966...3.6********76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    
MDHSIMMVKN EIENYSGSSP AMIINAPEGG AEAGPVVRRR RREPSLLAPI SGDTNGGGIG  60
KTSLSGITVK RSSRFRGVSR FRACRDDKKI LSCRHRWTGR FEAHLWDKNS WNPTQRKKGK  120
QVYLGAYDEE EAAARAYDLA ALKYWGPTTY TNFPVMDYEK ELKIMENLTK EEYLASLRRK  180
SSGFSRGVSK YRGVARHHQN GRWEARIGRV FGNKYLYLGT YSEYKNSAYT LFYIVNWYSN  240
ASKTSHLNIS PSAILPKSFS PGTQEEAARA YDIAAIEYKG VNAVTNFDLR SYITWLKPTP  300
AHVAMNPAEA LAMQIPVDHF LPMETQMMML PQSNPFTSYH NAQSLGGGDG GSSSSNNQEA  360
SMIISPSGSS RKRSSSTALS LLLKSSMFRQ LVEKNSDAGE ENGGEMREPG AHPGEGYEYH  420
NFFQGDAAPD MDMCDLLSSG NVHAASGSAG FEEDIACYSG FGSMQSLQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121PTQRKKGKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-66AP2 family protein