PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G22280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 646aa    MW: 70222 Da    PI: 9.4648
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G22280.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06123143425
                      ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                      + C f+a+ G Ck G +C+F H
  ONIVA05G22280.1 123 RTCTFYAQ-GRCKNGKSCTFLH 143
                      78******.************* PP

Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    
MAGGGRGAGL PAAGEAAKAG RVGVGTTKRA RDPSPNSKDP NGFVGVIAAE KKPALQLHGD  60
EKYQKKAGND PVPPTIDDTS KTGGLHLHGG HVSQSPPDSN ALSSQRFGSS SPGGDMKNKT  120
RKRTCTFYAQ GRCKNGKSCT FLHEGEVSGS DNQVYGNHGG TGEGSEIQHP SSSKERQFKN  180
SAGSSQHEIY RTLVHAYGED NRGLTHPVVK HSCHMLKASH GFKIGGSLTA NPTNEVVQLP  240
VVQEKNHEPY FMGHQISLGT NNCLNDMGAY SRLRLDGGKL QFEVAKGDSP RDSHLSRSYL  300
EKNPLKPDYR YQPFDSTISL DPHQYSKKLS AYGGATENLP HKHQEEKSSS HVSYSLNSYT  360
GFRKQGHDSS DFFLVNQSLR ATSHHGTLPL HQLTPDKDAS HHKGADFDKG GTSRSTLHVS  420
SSSQPVVASA GKLSPIKDEV WITSVPFVPS FNFPDFPGST SPSKSQYDPL VDSIDPPKVE  480
SLNNLKTSNI SCSISSQHVD TNVIRGGSLE KPLTFADKLA RNVSAKGSND FGLISYDRGH  540
SSSLDGDNRV KTCERKNDAS LNNEKSDFRF HLVEHVKELV KPIWKEGNLS KEAHKLIVKK  600
SVDKIFASLE PNQMPETEKA ITTYITASAP KIEKLVKAYV DRHRTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-14C3H family protein