PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G20060.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 593aa MW: 65472.8 Da PI: 8.2659

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G20060.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.1e-17	55	101	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av + g++Wk+Ia+ + Rt+ qc +rwqk+l ONIVA05G20060.1 55 KGGWTPEEDEKLRKAVDIYNGKNWKKIAESFS-DRTEVQCLHRWQKVL 101 688***************************.**********986 PP
2	Myb_DNA-binding	59.2	9.3e-19	107	153	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ +++ vk++G++ W+ Iar ++ gR +kqc++rw+++l ONIVA05G20060.1 107 KGPWTQEEDDVIINMVKKHGPKKWSVIARSLN-GRIGKQCRERWHNHL 153 79****************************.***********97 PP
3	Myb_DNA-binding	51.3	2.7e-16	159	202	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT eE+ l++a+ ++G++ W+ Ia+ ++ gRt++++k++w++ ONIVA05G20060.1 159 KEAWTVEEERVLARAHCMYGNK-WAEIAKLLP-GRTDNSIKNHWNS 202 579*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence
MPAVKVEEEE EERNPVASSP SVLEGSAHAA ALASPTAADS IFGRRRKSGP VRRAKGGWTP 60 EEDEKLRKAV DIYNGKNWKK IAESFSDRTE VQCLHRWQKV LDPELIKGPW TQEEDDVIIN 120 MVKKHGPKKW SVIARSLNGR IGKQCRERWH NHLDPQIRKE AWTVEEERVL ARAHCMYGNK 180 WAEIAKLLPG RTDNSIKNHW NSSLRKKIDD YNTRDILPVH PPVVGDGLKQ LPKRPPVDNH 240 FDLNKEPIIC SRDRLGVVHS DPTSHQRASN LKDFKGCADY LSLGQPVTSC EASAADDSAF 300 DLATQGMRMD SVHDKGTGNN FVCGKVQGIN FLGDKGLKIN QISDKMGCSR QAKREGEAAI 360 NGGGSSLQSE AHSVGSLCYQ IPKMEDIAPA QSPVFTANYV PEHSRNVMHS PNGYTTPPTH 420 GKGSDQLSVE SILRSAAEKF HGTPSILRRR KRDKPTPAED NDLKIGRLSS DDFHTPIGKC 480 TTDSPQSFKT AALLSLGPMD EQGSLDVSPP YRLRSKRLAV LKTVQNHLDF SSDEMSICDT 540 TMKSACGNSD CANASSGVSS IQGKKLDEHM IGLETLTMNF AHTTKLDATQ PNL

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence

MPAVKVEEEE EERNPVASSP SVLEGSAHAA ALASPTAADS IFGRRRKSGP VRRAKGGWTP  60
EEDEKLRKAV DIYNGKNWKK IAESFSDRTE VQCLHRWQKV LDPELIKGPW TQEEDDVIIN  120
MVKKHGPKKW SVIARSLNGR IGKQCRERWH NHLDPQIRKE AWTVEEERVL ARAHCMYGNK  180
WAEIAKLLPG RTDNSIKNHW NSSLRKKIDD YNTRDILPVH PPVVGDGLKQ LPKRPPVDNH  240
FDLNKEPIIC SRDRLGVVHS DPTSHQRASN LKDFKGCADY LSLGQPVTSC EASAADDSAF  300
DLATQGMRMD SVHDKGTGNN FVCGKVQGIN FLGDKGLKIN QISDKMGCSR QAKREGEAAI  360
NGGGSSLQSE AHSVGSLCYQ IPKMEDIAPA QSPVFTANYV PEHSRNVMHS PNGYTTPPTH  420
GKGSDQLSVE SILRSAAEKF HGTPSILRRR KRDKPTPAED NDLKIGRLSS DDFHTPIGKC  480
TTDSPQSFKT AALLSLGPMD EQGSLDVSPP YRLRSKRLAV LKTVQNHLDF SSDEMSICDT  540
TMKSACGNSD CANASSGVSS IQGKKLDEHM IGLETLTMNF AHTTKLDATQ PNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	448	454	RRRKRDK
2	448	455	RRRKRDKP
3	449	455	RRRKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-101	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G20060.1