PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G19800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 24386.6 Da PI: 8.2186 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.4 | 8.2e-06 | 50 | 103 | 4 | 54 |
HHHHHHHHHHHHHHHH......HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsa......feeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++ f+eL +l + + ++ +K++iL A + +++L ONIVA05G19800.1 50 TKACREKLRRDRLNERhvshfqFNELSAILEPG---KPPRADKVSILSDAARLLSQL 103 5678***********77777779*********9...89***************9999 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MSCGGAGQSG WLLEYGLVEE EIQGSDFIYM VDDPAAVSRS RPESSAPPGT KACREKLRRD 60 RLNERHVSHF QFNELSAILE PGKPPRADKV SILSDAARLL SQLRAEAQKL KSSNESLQDS 120 IKSLKAEKSE LRDEKTRLKA ERERLEQMLK GVGAATPAAP APFVPHHAAA VAAAPAYHPA 180 AFAQAGGKYV PYATNYAPPA AFWQWIPPTS LDTSKDPVMW PPVA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 4e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA05G19800.1 |