PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G19090.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 354aa MW: 39626 Da PI: 9.0536

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G19090.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.5	3.1e-08	27	73	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +W++ Ed+ + a ++ + +W+++a++++ gR++ ++ +++q + ONIVA05G19090.1 27 PWSKAEDKVFESALVAFPEHthnRWALVASRLP-GRSAHEVWEHYQVL 73 8************99999999******.**********76 PP
2	Myb_DNA-binding	43.8	6e-14	114	158	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ +++G g+W+ I+r k+Rt+ q+ s+ qk+ ONIVA05G19090.1 114 PWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKF 158 8******************************************98 PP
3	Myb_DNA-binding	22.2	3.4e-07	198	244	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +W++ Ed+ + a ++ + +W+ +a++++ gR++ ++ ++++ + ONIVA05G19090.1 198 PWSKAEDKVFESALVAFPEHthnRWAIVASRLP-GRSAHEVWEHYRVL 244 8************99999999******.*********975 PP
4	Myb_DNA-binding	43.8	6e-14	286	330	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ +++G g+W+ I+r k+Rt+ q+ s+ qk+ ONIVA05G19090.1 286 PWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKF 330 8******************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MAFYLGSMGG SPSSWGVAEV PVPSSRPWSK AEDKVFESAL VAFPEHTHNR WALVASRLPG 60 RSAHEVWEHY QVLVDDVDLI ERGMVASPGC WDDDNNSAGH GRGSGGDERR RGVPWTEEEH 120 RLFLEGLEKY GRGDWRNISR WSVKTRTPTQ VASHAQKFFI RQANASSRGD SKRMAFYGGE 180 MGGSSSSWVA PLVPSSRPWS KAEDKVFESA LVAFPEHTHN RWAIVASRLP GRSAHEVWEH 240 YRVLVDDVDL IERGMVASPG CWDDGAGRGG AQGASRGGDE RRRGVPWTEE EHRLFLEGLE 300 KYGRGDWRNI SRWSVKTRTP TQVASHAQKF FIRQANAGNR SDSKRKSIHD IIAP

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MAFYLGSMGG SPSSWGVAEV PVPSSRPWSK AEDKVFESAL VAFPEHTHNR WALVASRLPG  60
RSAHEVWEHY QVLVDDVDLI ERGMVASPGC WDDDNNSAGH GRGSGGDERR RGVPWTEEEH  120
RLFLEGLEKY GRGDWRNISR WSVKTRTPTQ VASHAQKFFI RQANASSRGD SKRMAFYGGE  180
MGGSSSSWVA PLVPSSRPWS KAEDKVFESA LVAFPEHTHN RWAIVASRLP GRSAHEVWEH  240
YRVLVDDVDL IERGMVASPG CWDDGAGRGG AQGASRGGDE RRRGVPWTEE EHRLFLEGLE  300
KYGRGDWRNI SRWSVKTRTP TQVASHAQKF FIRQANAGNR SDSKRKSIHD IIAP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	3e-43	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G19090.1