PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G17790.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 315aa    MW: 35932 Da    PI: 7.3234
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G17790.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.94.8e-27112162151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krien++nrqvtfskRr+gilKKA E+ vLCdaev v+ifss gkl +y++
  ONIVA05G17790.1 112 KRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCT 162
                      79***********************************************96 PP
2K-box58.23.6e-20174272197
            K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqR..hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                      yq++sgk l+++k++sl+ e++++kke++n+q e+R  h++GedL+sL+ keL  +e++L+++  + R+k +++++++ ++ ++ e+e++    
  ONIVA05G17790.1 174 YQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRlvHMKGEDLNSLQPKELIAIEEALNNGQANLRDKMMDHWRMHKRNEKMLEDEHKMLAF 267
                      79999999************************998888********************************998888888888888888777766 PP

            K-box  93 aLrkk 97 
                      + +++
  ONIVA05G17790.1 268 RVHQQ 272
                      66665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MHHARERERE RAVSISGAPA LPHRESPPHL HSFHGDLPPP PPPLHPPLLL HSNHGVQSST  60
PPTIPTLKTG RTATPQPSCF FESEVKICFL VCVLGVEEEE ELDMGRGKIE IKRIENSTNR  120
QVTFSKRRAG ILKKAREIGV LCDAEVGVVI FSSAGKLSDY CTPKTTLSRI LEKYQTNSGK  180
ILWDEKHKSL SAEIDRVKKE NDNMQIELRL VHMKGEDLNS LQPKELIAIE EALNNGQANL  240
RDKMMDHWRM HKRNEKMLED EHKMLAFRVH QQEVELSGGI RELELGYHHD DRDFAASMPF  300
TFRVQPSHPN LQQEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.17e-71MIKC_MADS family protein