PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G11160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24103.5 Da PI: 8.8109 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.9 | 9.5e-17 | 16 | 60 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 krie k r v fskRr++++ KA ELS LC+a++a +++s+ g+ ONIVA05G11160.1 16 KRIEKKDARDVCFSKRRQTLFNKAGELSLLCNANIAAVVISPAGR 60 79****************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MVKGKGRAGR KKVEIKRIEK KDARDVCFSK RRQTLFNKAG ELSLLCNANI AAVVISPAGR 60 GFSFALPSVD DVADRLASMA MGIPNNHSLG GGYHDSGEVT NIAQQQKIEY VELQKSLEKS 120 EKKKRVQEAM EKERAGHLMQ SLTSEVNLLG QDELEEMHNK LSALPYTSIA KFYQVLQDAK 180 GTRMPLPQPH IEIACQSQFL FEEQAVTPAN ADFPGSNT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 8e-15 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA05G11160.1 |