PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G01850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 21081.1 Da PI: 6.7542 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.3 | 4.8e-28 | 38 | 125 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+C++ Cvlapyfp ++p+kf +h+ +lpee+r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ lka+l ONIVA05G01850.1 38 PCAACKILRRRCVDRCVLAPYFPPTEPHKFTTAHR------------ELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLKAQL 119 7*******************************997............99********************************************* PP DUF260 95 allkee 100 a++++e ONIVA05G01850.1 120 ARAHAE 125 **9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence |
MGSSSDTACT VATAPPSPTP TSPPPQLAAT TTTVVLSPCA ACKILRRRCV DRCVLAPYFP 60 PTEPHKFTTA HRELPEEQRA DAVSSMVYEA NARIRDPVYG CAGAICQLQK QVNDLKAQLA 120 RAHAELAGAR AQHAHLVALL CMEMAAAAPP QHPTTTAAAA AYCAAVGGAA SPAAPVDALY 180 VVDGAGAAAM QASPIGWVDE PLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-39 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA05G01850.1 |