PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G29840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 523aa    MW: 56748.1 Da    PI: 5.9029
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G29840.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.61.6e-25123227299
                      EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                       k+lt+sd+++ g +++p+ +a+++       + ++ +s  lt++d++g sWe+++iyr++++r++lt+GW++Fv+a++L +gD+vvF+  g  
  ONIVA04G29840.1 123 AKQLTQSDANNGGGFSVPRLCADHIfpalnldDDPPVQS--LTMRDLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKQLVAGDTVVFMWCGAp 214
                      69*******************9777*****976676675..************************************************88655 PP

                      .SEE..EEEEE-S CS
               B3  88 .sefelvvkvfrk 99 
                        e++l+v+v+r+
  ONIVA04G29840.1 215 aPERKLLVGVRRA 227
                      7999999999986 PP

2Auxin_resp45.53.2e-16250325174
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsdldpvrW 74 
                      a++ a+++ +F+v+Y+Pr ++ eFvv++ +v k l++++  Gm+++ + +e ed ++  +  Gt + +++ +  r 
  ONIVA04G29840.1 250 AVRLAAEQAAFRVTYYPRHGAGEFVVPRVEVDKGLTTPWRCGMQVRAQvMEAEDTRRLAWlNGTLTNLRHQQIWRT 325
                      5778999***************************************9758***************99988666444 PP

Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    
MARPPAATAP PPPPPPPPPP PIDRLVWLAC AAPLSRIPVV GTQVSYFPEG HAEQCPAPLP  60
DPLPSAHRFF LCTITAVDLS ADTTTGEPYA TISLLPLRHD APAPAPAAAE LAEAESQEFR  120
YYAKQLTQSD ANNGGGFSVP RLCADHIFPA LNLDDDPPVQ SLTMRDLQGD SWEFRHIYRG  180
TPRRHLLTTG WSKFVNAKQL VAGDTVVFMW CGAPAPERKL LVGVRRAARY SGESACNARG  240
RVQPQEVMEA VRLAAEQAAF RVTYYPRHGA GEFVVPRVEV DKGLTTPWRC GMQVRAQVME  300
AEDTRRLAWL NGTLTNLRHQ QIWRTLEVEW DASAASSSMK NRFVNPWQVQ PVDFPPLPMG  360
LKISNNNISA PVCNGDSLLV PPILMHPQPQ PPADIQGARH NNGHAYADIP SSSTPSMVRT  420
QQLFPRGLQI LVPHTDIVTP QNASPPDNPV NTPLSASDGM KTIQLFGVTI TSPVQGDTNG  480
AFASAQVNQV PEGVDDETAT EEASDTSLPD SLTNGHNQDG ARL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.17e-76ARF family protein