PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G29840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARF | ||||||||
Protein Properties | Length: 523aa MW: 56748.1 Da PI: 5.9029 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 80.6 | 1.6e-25 | 123 | 227 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 k+lt+sd+++ g +++p+ +a+++ + ++ +s lt++d++g sWe+++iyr++++r++lt+GW++Fv+a++L +gD+vvF+ g ONIVA04G29840.1 123 AKQLTQSDANNGGGFSVPRLCADHIfpalnldDDPPVQS--LTMRDLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKQLVAGDTVVFMWCGAp 214 69*******************9777*****976676675..************************************************88655 PP .SEE..EEEEE-S CS B3 88 .sefelvvkvfrk 99 e++l+v+v+r+ ONIVA04G29840.1 215 aPERKLLVGVRRA 227 7999999999986 PP | |||||||
2 | Auxin_resp | 45.5 | 3.2e-16 | 250 | 325 | 1 | 74 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsdldpvrW 74 a++ a+++ +F+v+Y+Pr ++ eFvv++ +v k l++++ Gm+++ + +e ed ++ + Gt + +++ + r ONIVA04G29840.1 250 AVRLAAEQAAFRVTYYPRHGAGEFVVPRVEVDKGLTTPWRCGMQVRAQvMEAEDTRRLAWlNGTLTNLRHQQIWRT 325 5778999***************************************9758***************99988666444 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence |
MARPPAATAP PPPPPPPPPP PIDRLVWLAC AAPLSRIPVV GTQVSYFPEG HAEQCPAPLP 60 DPLPSAHRFF LCTITAVDLS ADTTTGEPYA TISLLPLRHD APAPAPAAAE LAEAESQEFR 120 YYAKQLTQSD ANNGGGFSVP RLCADHIFPA LNLDDDPPVQ SLTMRDLQGD SWEFRHIYRG 180 TPRRHLLTTG WSKFVNAKQL VAGDTVVFMW CGAPAPERKL LVGVRRAARY SGESACNARG 240 RVQPQEVMEA VRLAAEQAAF RVTYYPRHGA GEFVVPRVEV DKGLTTPWRC GMQVRAQVME 300 AEDTRRLAWL NGTLTNLRHQ QIWRTLEVEW DASAASSSMK NRFVNPWQVQ PVDFPPLPMG 360 LKISNNNISA PVCNGDSLLV PPILMHPQPQ PPADIQGARH NNGHAYADIP SSSTPSMVRT 420 QQLFPRGLQI LVPHTDIVTP QNASPPDNPV NTPLSASDGM KTIQLFGVTI TSPVQGDTNG 480 AFASAQVNQV PEGVDDETAT EEASDTSLPD SLTNGHNQDG ARL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 7e-76 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA04G29840.1 |