PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G29800.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 483aa MW: 52695.5 Da PI: 8.5256

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G29800.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.6	2.5e-06	247	269	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdCg+ F r+++L+ H++ H ONIVA04G29800.1 247 SCPDCGEIFVRPDSLHLHQSIrH 269 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MVEPGRARET KVTASASSSA GSDAAVMKKK KKKKKLVVAS RKVDEKDKKQ VDYKCSRSSG 60 RDECCKVESR HQQCTEPESP SYRLALRSLF SCRNSSSSSH AGHHHHRAAD GKKLGCNSSS 120 ICKVKQDNPM QQHMRRAEDE LKVKDKPPVA EPYCKRRASV SACNISSERS VKKSVKQQQQ 180 EASSSLQSSA SISASSCSST AGGGGSFRGM QQLSLRRLSG CYECHMVVDP ISGVFRDNSS 240 MRATICSCPD CGEIFVRPDS LHLHQSIRHA VSELGAEDTS RNIISIIFQS SWLKKQSPVC 300 AIDRILKVHN AARTLARFDD YRAAVKAKAM AHRHPRCTAD GNELLRFHCA TLSCDLGLHG 360 ATHLCDHLSC AACAIIRHGF RPPAPGAGIR TMATSGRAHD AVVSSGSEGD RRAMLVCRVI 420 AGRVRREEAA AAAAEEEEEE EEEEEEEYDS VAGTTPGLYS NLDELDVFNP TAILPCFVVV 480 YRA

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MVEPGRARET KVTASASSSA GSDAAVMKKK KKKKKLVVAS RKVDEKDKKQ VDYKCSRSSG  60
RDECCKVESR HQQCTEPESP SYRLALRSLF SCRNSSSSSH AGHHHHRAAD GKKLGCNSSS  120
ICKVKQDNPM QQHMRRAEDE LKVKDKPPVA EPYCKRRASV SACNISSERS VKKSVKQQQQ  180
EASSSLQSSA SISASSCSST AGGGGSFRGM QQLSLRRLSG CYECHMVVDP ISGVFRDNSS  240
MRATICSCPD CGEIFVRPDS LHLHQSIRHA VSELGAEDTS RNIISIIFQS SWLKKQSPVC  300
AIDRILKVHN AARTLARFDD YRAAVKAKAM AHRHPRCTAD GNELLRFHCA TLSCDLGLHG  360
ATHLCDHLSC AACAIIRHGF RPPAPGAGIR TMATSGRAHD AVVSSGSEGD RRAMLVCRVI  420
AGRVRREEAA AAAAEEEEEE EEEEEEEYDS VAGTTPGLYS NLDELDVFNP TAILPCFVVV  480
YRA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	34	KKKKKKK
2	29	35	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	3e-87	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G29800.1