PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G29260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YC | ||||||||
Protein Properties | Length: 122aa MW: 13162 Da PI: 8.5087 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 100.2 | 1.5e-31 | 22 | 112 | 19 | 99 |
NF-YC 19 helPlarikkilka...dedv.......kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 h+lPlarikki+k d v +mis eaPv++skacelfi elt r+w + e krrt++k d+aaav++td fdflvd+v d ONIVA04G29260.1 22 HALPLARIKKIMKRsagDSSVvdggggaRMISGEAPVVFSKACELFIAELTRRAWAATLEGKRRTVHKEDVAAAVQNTDLFDFLVDVVMAD 112 89***********7333343334444448**********************************************************9877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence |
MRQARPYSAM FAGGVSARTG PHALPLARIK KIMKRSAGDS SVVDGGGGAR MISGEAPVVF 60 SKACELFIAE LTRRAWAATL EGKRRTVHKE DVAAAVQNTD LFDFLVDVVM ADGHDDDHTD 120 YK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.1 | 8e-31 | NF-YC family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA04G29260.1 |