PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G28640.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

GeBP

Protein Properties

Length: 378aa MW: 40009.5 Da PI: 6.1877

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G28640.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	111.7	4.6e-35	83	182	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 lfqrlw+eeDeiv+L+++ +f+a++g+ +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ +++g+++sf+++h+q ife+ ONIVA04G28640.1 83 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVDRlRATGQSFSFRSPHEQAIFEI 176 79***********************9977778***********************************999************** PP DUF573 92 skkiWg 97 ++ iW+ ONIVA04G28640.1 177 ARGIWR 182 ***7 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MLPTVVDDPS AAAAAAAVGA AASSSFPDAD VYGNGDSDDI DFPSDPNHAT TQAFSSAAAA 60 AAAAGPGGGG GAGSGSGGER RPLFQRLWTE EDEIVILRAF AEFTAQRGTA FASHQYDTDP 120 FYEDMRRRLQ LDFSKSQLVE KLRRLKRKYR NCVDRLRATG QSFSFRSPHE QAIFEIARGI 180 WRPTSDKHGR DADSDDDALP DAAAAVAVPA PANGEVRSPS STRAQQRRGR RRRTAAAAAA 240 TATAADASEP PQPYPPAPAP APVKAEDALP HFFPQGAAVT ATAHVHGVDP ASAAASAAAN 300 AEGGILAPLF KEMVRAMLTA GMAPPSLEPP APGIPMKGER WRQQRILELE VYLRRIDLLQ 360 DQVRTALEEL KSTPPATQ

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MLPTVVDDPS AAAAAAAVGA AASSSFPDAD VYGNGDSDDI DFPSDPNHAT TQAFSSAAAA  60
AAAAGPGGGG GAGSGSGGER RPLFQRLWTE EDEIVILRAF AEFTAQRGTA FASHQYDTDP  120
FYEDMRRRLQ LDFSKSQLVE KLRRLKRKYR NCVDRLRATG QSFSFRSPHE QAIFEIARGI  180
WRPTSDKHGR DADSDDDALP DAAAAVAVPA PANGEVRSPS STRAQQRRGR RRRTAAAAAA  240
TATAADASEP PQPYPPAPAP APVKAEDALP HFFPQGAAVT ATAHVHGVDP ASAAASAAAN  300
AEGGILAPLF KEMVRAMLTA GMAPPSLEPP APGIPMKGER WRQQRILELE VYLRRIDLLQ  360
DQVRTALEEL KSTPPATQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	5e-33	GeBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G28640.1