PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G28100.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB_related

Protein Properties

Length: 447aa MW: 46335.3 Da PI: 9.3218

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G28100.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39	1.9e-12	274	318	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky ONIVA04G28100.2 274 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 318 6***************************99**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MSASASAVCL LPPRGGSLAR PDTALPPASQ PATVAVKQNI PRLASPRLAV TSITLLPRRG 60 RRCAVDLLLL HLHRLLLFLS LFSEETPNLF LPRKPAAFLK RIKSPSLIRR RNPSPQNLAA 120 PRAVLGFELM AVEEASSSSG GGRGGGGGGG GEEGLSGCGG GWTREQEKAF ENALATVGDD 180 EEEGDGLWEK LAEAVEGKTA DEVRRHYELL VEDVDGIEAG RVPLLVYAGD GGVEEGSAGG 240 GKKGGGGGGG GGGGGHGEKG SAKSAEQERR KGIAWTEDEH RLFLLGLEKY GKGDWRSISR 300 NFVISRTPTQ VASHAQKYFI RLNSMNRERR RSSIHDITSV NNGDTSAAQG PITGQPNGPS 360 ANPGKSSKQS PQPANAPPGV DAYGTTIGQP VGGPLVSAVG TPVTLPVPAA PHIAYGMHAP 420 VPGAVVPGAP VNMPPMPYPM PPPTSHG

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MSASASAVCL LPPRGGSLAR PDTALPPASQ PATVAVKQNI PRLASPRLAV TSITLLPRRG  60
RRCAVDLLLL HLHRLLLFLS LFSEETPNLF LPRKPAAFLK RIKSPSLIRR RNPSPQNLAA  120
PRAVLGFELM AVEEASSSSG GGRGGGGGGG GEEGLSGCGG GWTREQEKAF ENALATVGDD  180
EEEGDGLWEK LAEAVEGKTA DEVRRHYELL VEDVDGIEAG RVPLLVYAGD GGVEEGSAGG  240
GKKGGGGGGG GGGGGHGEKG SAKSAEQERR KGIAWTEDEH RLFLLGLEKY GKGDWRSISR  300
NFVISRTPTQ VASHAQKYFI RLNSMNRERR RSSIHDITSV NNGDTSAAQG PITGQPNGPS  360
ANPGKSSKQS PQPANAPPGV DAYGTTIGQP VGGPLVSAVG TPVTLPVPAA PHIAYGMHAP  420
VPGAVVPGAP VNMPPMPYPM PPPTSHG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	149	GGGRGGGGGG
2	141	150	GGGRGGGGGG
3	239	248	GGGRGGGGGG
4	240	249	GGGRGGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-77	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G28100.2