PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G28100.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB_related

Protein Properties

Length: 398aa MW: 42015.7 Da PI: 10.0588

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G28100.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.2	1.6e-12	225	269	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky ONIVA04G28100.1 225 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 269 6***************************99**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MSASASAVCL LPPRGGSLAR PDTALPPASQ PATVAVKQNI PRLASPRLAV TSITLLPRRG 60 RRCAVDLLLL HLHRLLLFLS LFSEETPNLF LPRKPAAFLK RIKSPSLIRR RNPSPQNLAA 120 PRAVLGFELM AVEEASSSSG GGRGGGGGGG GEEGLSGCGG GWTREQEKAF ENALATVGDD 180 EEEGDGLWEK LAEAVEGKTA DEVRRHYELL GSAKSAEQER RKGIAWTEDE HRLFLLGLEK 240 YGKGDWRSIS RNFVISRTPT QVASHAQKYF IRLNSMNRER RRSSIHDITS VNNGDTSAAQ 300 GPITGQPNGP SANPGKSSKQ SPQPANAPPG VDAYGTTIGQ PVGGPLVSAV GTPVTLPVPA 360 APHIAYGMHA PVPGAVVPGA PVNMPPMPYP MPPPTSHG

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MSASASAVCL LPPRGGSLAR PDTALPPASQ PATVAVKQNI PRLASPRLAV TSITLLPRRG  60
RRCAVDLLLL HLHRLLLFLS LFSEETPNLF LPRKPAAFLK RIKSPSLIRR RNPSPQNLAA  120
PRAVLGFELM AVEEASSSSG GGRGGGGGGG GEEGLSGCGG GWTREQEKAF ENALATVGDD  180
EEEGDGLWEK LAEAVEGKTA DEVRRHYELL GSAKSAEQER RKGIAWTEDE HRLFLLGLEK  240
YGKGDWRSIS RNFVISRTPT QVASHAQKYF IRLNSMNRER RRSSIHDITS VNNGDTSAAQ  300
GPITGQPNGP SANPGKSSKQ SPQPANAPPG VDAYGTTIGQ PVGGPLVSAV GTPVTLPVPA  360
APHIAYGMHA PVPGAVVPGA PVNMPPMPYP MPPPTSHG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	149	GGGRGGGGGG
2	141	150	GGGRGGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	4e-69	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G28100.1