PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G27670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARF | ||||||||
Protein Properties | Length: 842aa MW: 93491 Da PI: 5.9778 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.4 | 1.2e-22 | 161 | 262 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d + +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ ONIVA04G27670.1 161 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 250 99***********************9*****86555544..8************************************************..88 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ ONIVA04G27670.1 251 EKNQLLLGIRRA 262 99999****997 PP | |||||||
2 | Auxin_resp | 112.6 | 3.8e-37 | 287 | 370 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k ONIVA04G27670.1 287 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 370 79*******************************986599******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence |
MVAISELGLR VCASLVWSEE EEMSSSSAAS IGPPQPPPPP APPEEGGWLE KKCLNSELWH 60 ACAGPLVCLP TVGTRVVYFP QGHSEQVAAS TNKEVEGHIP NYPNLPAQLI CQLHDVTMHA 120 DVETDEVYAQ MTLQPLNPQE QNDAYLPAEM GIMSKQPTNY FCKTLTASDT STHGGFSVPR 180 RAAERVFPPL DFTQQPPAQE LIARDIHDIE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV 240 AGDSVLFIWN EKNQLLLGIR RASRPQTVMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF 300 YNPRASPSEF VIPLSKYIKA VFHTRISVGM RFRMLFETEE SSVRRYMGTI TEVSDADPVR 360 WPSSYWRSVK VGWDESTAGE RPPRVSLWEI EPLTTFPMYP SLFPLRVKHP WYSGVASLHD 420 DSNALMWLRG VAGEGGFQSL NFQSPGIGSW GQQRLHPSLL SSDHDQYQAV VAAAAASQSG 480 GYLKQQFLHL QQPMQSPQEH CNLNPLLQQQ ILQQASQQQI INPDAQNIQT MLSPSAIQQQ 540 LQQLQQMQQV QNDQKQKIQP DQSYQVPTSA VLPSPTSLPS HLREKFGFSD PNANSSSFIT 600 SSSSDNMLDS SFLQGSSKAV DLSRFNQPVA SEQQQQQAWK QKFMGSQSVS FGGSVLHNSP 660 TSKDGSVENK IGRDVQNQSL FSPQVDSSSL LYNMVPNLTS NVSDGNLSTI PSGSTYLQNA 720 MYGCLDDSSG LLQNTGENDP ATRTFVKVYK SGSVGRSLDI TRFSNYAELR EELGQMFGIK 780 GQLDDPDRSG WQLVFVDREN DVLLLGDDPW ESFVNSVWYI KILSPEDVHK MGKQGNDPRY 840 LS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA04G27670.1 |