PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G27670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 842aa    MW: 93491 Da    PI: 5.9778
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G27670.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.2e-22161262199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  ONIVA04G27670.1 161 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 250
                      99***********************9*****86555544..8************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  ONIVA04G27670.1 251 EKNQLLLGIRRA 262
                      99999****997 PP

2Auxin_resp112.63.8e-37287370183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+++YnPras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
  ONIVA04G27670.1 287 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 370
                      79*******************************986599******************************************985 PP

Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    
MVAISELGLR VCASLVWSEE EEMSSSSAAS IGPPQPPPPP APPEEGGWLE KKCLNSELWH  60
ACAGPLVCLP TVGTRVVYFP QGHSEQVAAS TNKEVEGHIP NYPNLPAQLI CQLHDVTMHA  120
DVETDEVYAQ MTLQPLNPQE QNDAYLPAEM GIMSKQPTNY FCKTLTASDT STHGGFSVPR  180
RAAERVFPPL DFTQQPPAQE LIARDIHDIE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV  240
AGDSVLFIWN EKNQLLLGIR RASRPQTVMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF  300
YNPRASPSEF VIPLSKYIKA VFHTRISVGM RFRMLFETEE SSVRRYMGTI TEVSDADPVR  360
WPSSYWRSVK VGWDESTAGE RPPRVSLWEI EPLTTFPMYP SLFPLRVKHP WYSGVASLHD  420
DSNALMWLRG VAGEGGFQSL NFQSPGIGSW GQQRLHPSLL SSDHDQYQAV VAAAAASQSG  480
GYLKQQFLHL QQPMQSPQEH CNLNPLLQQQ ILQQASQQQI INPDAQNIQT MLSPSAIQQQ  540
LQQLQQMQQV QNDQKQKIQP DQSYQVPTSA VLPSPTSLPS HLREKFGFSD PNANSSSFIT  600
SSSSDNMLDS SFLQGSSKAV DLSRFNQPVA SEQQQQQAWK QKFMGSQSVS FGGSVLHNSP  660
TSKDGSVENK IGRDVQNQSL FSPQVDSSSL LYNMVPNLTS NVSDGNLSTI PSGSTYLQNA  720
MYGCLDDSSG LLQNTGENDP ATRTFVKVYK SGSVGRSLDI TRFSNYAELR EELGQMFGIK  780
GQLDDPDRSG WQLVFVDREN DVLLLGDDPW ESFVNSVWYI KILSPEDVHK MGKQGNDPRY  840
LS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein