PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G27660.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 711aa MW: 80046.9 Da PI: 5.1819

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G27660.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.9e-06	116	138	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +f + G C GdrC F Hgp ONIVA04G27660.1 116 VPCYYFKK-GNCLKGDRCAFYHGP 138 6899999.************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence
MEADGAAAAA AAGEASTEAG ARPLAPEEEA LRRNTDCVYF LASPLTCKKG NECDFRHSDN 60 ARMNPRDCWY WLNSNCLNPK CPFRHPPIDG MFGAPTTGMP AVSSHYAPFN SGKQLVPCYY 120 FKKGNCLKGD RCAFYHGPQS VGNNPSEQVV KVSSLPLEQL QTQKNDLLGI KDSVQSTNSI 180 QHGAPITNER GKTAIDRSTV NSARTATVAI PVASNAMSCP KSEKVKSSTP AALKESFTTS 240 SGGDHPECYQ NHFPMDSDPV RDWNQSYEMP PADDLPQNSR EADELLGESS PGFDVLVDND 300 ADGAAYLHDE DFGGDMYPVE DYEYAPADFD VCAHHERERF NGMDEQDQMG HMYDGYERKR 360 RRSSERSMER PFHSERRFLQ RDRDRVEMDG SDLRHRLRRR RINESSLAIS PERNGEQQRR 420 DERYRERAHG HRSHRDHHQS SRGSTLSSRL QGRIKLPGRS PDRVDTRSEK ERDRRRLRDR 480 LSPVRRTEFQ GTRHREAGQH EEQTQRRSSE LALGSRNADG QHLTKDVPDS HNFPHRKNLR 540 DSSKANGSVE PEASLDFEGP KPLSVILQRK REAAWANGTS ACSPKQDKSA EVSHRQASLA 600 EAEKEGDNII SSDEYKSGSG DEEFRDEGHI PVEGHGQSSS HGDKLEAEDI IEVDPVENQD 660 ADNYDQREGE SYYEPIGGQD YKSDDENAYE DDDEEYDDDD DFARKVGVVF S

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence

MEADGAAAAA AAGEASTEAG ARPLAPEEEA LRRNTDCVYF LASPLTCKKG NECDFRHSDN  60
ARMNPRDCWY WLNSNCLNPK CPFRHPPIDG MFGAPTTGMP AVSSHYAPFN SGKQLVPCYY  120
FKKGNCLKGD RCAFYHGPQS VGNNPSEQVV KVSSLPLEQL QTQKNDLLGI KDSVQSTNSI  180
QHGAPITNER GKTAIDRSTV NSARTATVAI PVASNAMSCP KSEKVKSSTP AALKESFTTS  240
SGGDHPECYQ NHFPMDSDPV RDWNQSYEMP PADDLPQNSR EADELLGESS PGFDVLVDND  300
ADGAAYLHDE DFGGDMYPVE DYEYAPADFD VCAHHERERF NGMDEQDQMG HMYDGYERKR  360
RRSSERSMER PFHSERRFLQ RDRDRVEMDG SDLRHRLRRR RINESSLAIS PERNGEQQRR  420
DERYRERAHG HRSHRDHHQS SRGSTLSSRL QGRIKLPGRS PDRVDTRSEK ERDRRRLRDR  480
LSPVRRTEFQ GTRHREAGQH EEQTQRRSSE LALGSRNADG QHLTKDVPDS HNFPHRKNLR  540
DSSKANGSVE PEASLDFEGP KPLSVILQRK REAAWANGTS ACSPKQDKSA EVSHRQASLA  600
EAEKEGDNII SSDEYKSGSG DEEFRDEGHI PVEGHGQSSS HGDKLEAEDI IEVDPVENQD  660
ADNYDQREGE SYYEPIGGQD YKSDDENAYE DDDEEYDDDD DFARKVGVVF S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	358	362	RKRRR
2	358	363	RKRRRS
3	474	481	RRRLRDRL

Link Out ? help Back to Top
Ensembl	ONIVA04G27660.1