PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G27660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 711aa    MW: 80046.9 Da    PI: 5.1819
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G27660.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.9e-06116138427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      ++C +f + G C  GdrC F Hgp
  ONIVA04G27660.1 116 VPCYYFKK-GNCLKGDRCAFYHGP 138
                      689*9999.*************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    
MEADGAAAAA AAGEASTEAG ARPLAPEEEA LRRNTDCVYF LASPLTCKKG NECDFRHSDN  60
ARMNPRDCWY WLNSNCLNPK CPFRHPPIDG MFGAPTTGMP AVSSHYAPFN SGKQLVPCYY  120
FKKGNCLKGD RCAFYHGPQS VGNNPSEQVV KVSSLPLEQL QTQKNDLLGI KDSVQSTNSI  180
QHGAPITNER GKTAIDRSTV NSARTATVAI PVASNAMSCP KSEKVKSSTP AALKESFTTS  240
SGGDHPECYQ NHFPMDSDPV RDWNQSYEMP PADDLPQNSR EADELLGESS PGFDVLVDND  300
ADGAAYLHDE DFGGDMYPVE DYEYAPADFD VCAHHERERF NGMDEQDQMG HMYDGYERKR  360
RRSSERSMER PFHSERRFLQ RDRDRVEMDG SDLRHRLRRR RINESSLAIS PERNGEQQRR  420
DERYRERAHG HRSHRDHHQS SRGSTLSSRL QGRIKLPGRS PDRVDTRSEK ERDRRRLRDR  480
LSPVRRTEFQ GTRHREAGQH EEQTQRRSSE LALGSRNADG QHLTKDVPDS HNFPHRKNLR  540
DSSKANGSVE PEASLDFEGP KPLSVILQRK REAAWANGTS ACSPKQDKSA EVSHRQASLA  600
EAEKEGDNII SSDEYKSGSG DEEFRDEGHI PVEGHGQSSS HGDKLEAEDI IEVDPVENQD  660
ADNYDQREGE SYYEPIGGQD YKSDDENAYE DDDEEYDDDD DFARKVGVVF S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358362RKRRR
2358363RKRRRS
3474481RRRLRDRL