PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G27230.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 309aa MW: 31775.7 Da PI: 9.8875

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G27230.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.4	2.5e-08	105	130	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaHg+ ONIVA04G27230.2 105 KTRMCTKYNTAEGCKFGDKCHFAHGE 130 9***********************96 PP
2	zf-CCCH	38.1	2.6e-12	276	301	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +f + GtC +GdrC+FaHg+ ONIVA04G27230.2 276 YKTKLCENFVK-GTCTFGDRCHFAHGE 301 9********.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MEGASAARKR SRPDTANGGA AGGKRSRETE SFQTGLSSKS KPCTKFFSTI GCPFGEGCHF 60 SHFVPGGYQA VAKTLNLGNP AVPAPARAPM DHAAGGNSHP ASSGKTRMCT KYNTAEGCKF 120 GDKCHFAHGE RELGKPAYMS HESAMAPPMG GRYGGRPEPP PPAAMGPPAG NFGASATAKI 180 SVDASLAGGI IGKGGVNTKQ ICRVTGVKLS IRDHESDPNL KNIELEGNFD QIKQASNMVG 240 ELIATISAST PAKKPAGSAA GAAPAGRGGP GGRSNYKTKL CENFVKGTCT FGDRCHFAHG 300 ENEQRKGAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	3e-52	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G27230.2