PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G27230.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 479aa MW: 50890.4 Da PI: 8.7347

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G27230.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.3e-08	275	300	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaHg+ ONIVA04G27230.1 275 KTRMCTKYNTAEGCKFGDKCHFAHGE 300 9***********************96 PP
2	zf-CCCH	37.3	4.6e-12	446	471	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +f + GtC +GdrC+FaHg+ ONIVA04G27230.1 446 YKTKLCENFVK-GTCTFGDRCHFAHGE 471 9********.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MAPLFHMEAL LPSSISPKLN SILHSHIYPQ VGHVFRALAK FKSLLLDVVR KKRAPTRGGG 60 GKKYAIGYRS RPEKSKKRIA SFMKLLRFNW AAAAAVTPAR AKDLELHYHP YYYDYDDSTW 120 NVVVPADGAA EELRGGGGDD GEDCGYLCWL EEETSADALP AAGEGEDGGN GNGDGDGNGA 180 VNEIDRLAER FIARCHAKFL LEKQESYRRY QEMMARSITI GCPFGEGCHF SHFVPGGYQA 240 VAKTLNLGNP AVPAPARAPM DHAAGGNSHP ASSGKTRMCT KYNTAEGCKF GDKCHFAHGE 300 RELGKPAYMS HESAMAPPMG GRYGGRPEPP PPAAMGPPAG NFGASATAKI SVDASLAGGI 360 IGKGGVNTKQ ICRVTGVKLS IRDHESDPNL KNIELEGNFD QIKQASNMVG ELIATISAST 420 PAKKPAGSAA GAAPAGRGGP GGRSNYKTKL CENFVKGTCT FGDRCHFAHG ENEQRKGAA

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MAPLFHMEAL LPSSISPKLN SILHSHIYPQ VGHVFRALAK FKSLLLDVVR KKRAPTRGGG  60
GKKYAIGYRS RPEKSKKRIA SFMKLLRFNW AAAAAVTPAR AKDLELHYHP YYYDYDDSTW  120
NVVVPADGAA EELRGGGGDD GEDCGYLCWL EEETSADALP AAGEGEDGGN GNGDGDGNGA  180
VNEIDRLAER FIARCHAKFL LEKQESYRRY QEMMARSITI GCPFGEGCHF SHFVPGGYQA  240
VAKTLNLGNP AVPAPARAPM DHAAGGNSHP ASSGKTRMCT KYNTAEGCKF GDKCHFAHGE  300
RELGKPAYMS HESAMAPPMG GRYGGRPEPP PPAAMGPPAG NFGASATAKI SVDASLAGGI  360
IGKGGVNTKQ ICRVTGVKLS IRDHESDPNL KNIELEGNFD QIKQASNMVG ELIATISAST  420
PAKKPAGSAA GAAPAGRGGP GGRSNYKTKL CENFVKGTCT FGDRCHFAHG ENEQRKGAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	76	RKKRAPTRGGGGKKYAIGYRSRPEKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	3e-50	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G27230.1