PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G27230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 479aa    MW: 50890.4 Da    PI: 8.7347
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G27230.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.3e-08275300227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C  +     Ck+Gd+C+FaHg+
  ONIVA04G27230.1 275 KTRMCTKYNTAEGCKFGDKCHFAHGE 300
                      9***********************96 PP

2zf-CCCH37.34.6e-12446471127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt+lC +f + GtC +GdrC+FaHg+
  ONIVA04G27230.1 446 YKTKLCENFVK-GTCTFGDRCHFAHGE 471
                      9**********.*************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    
MAPLFHMEAL LPSSISPKLN SILHSHIYPQ VGHVFRALAK FKSLLLDVVR KKRAPTRGGG  60
GKKYAIGYRS RPEKSKKRIA SFMKLLRFNW AAAAAVTPAR AKDLELHYHP YYYDYDDSTW  120
NVVVPADGAA EELRGGGGDD GEDCGYLCWL EEETSADALP AAGEGEDGGN GNGDGDGNGA  180
VNEIDRLAER FIARCHAKFL LEKQESYRRY QEMMARSITI GCPFGEGCHF SHFVPGGYQA  240
VAKTLNLGNP AVPAPARAPM DHAAGGNSHP ASSGKTRMCT KYNTAEGCKF GDKCHFAHGE  300
RELGKPAYMS HESAMAPPMG GRYGGRPEPP PPAAMGPPAG NFGASATAKI SVDASLAGGI  360
IGKGGVNTKQ ICRVTGVKLS IRDHESDPNL KNIELEGNFD QIKQASNMVG ELIATISAST  420
PAKKPAGSAA GAAPAGRGGP GGRSNYKTKL CENFVKGTCT FGDRCHFAHG ENEQRKGAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15076RKKRAPTRGGGGKKYAIGYRSRPEKSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-50C3H family protein