PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G27140.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 1039aa    MW: 114354 Da    PI: 6.8923
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G27140.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.7e-23227328199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F   +++
  ONIVA04G27140.1 227 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--RDE 317
                      89*********************999*****9555555.49************************************************..456 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      + +l+++v+r+
  ONIVA04G27140.1 318 KSQLLLGVRRA 328
                      77789999997 PP
2Auxin_resp117.31.3e-38353435183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaas++s F+++YnPr+s+s Fv++v++++ka++++ svGmRf m+fete+ss+rr++Gtvvg+sd+dp+rWpnSkWr+L+
  ONIVA04G27140.1 353 AAHAASSGSSFTIYYNPRTSPSPFVIPVARYNKATYMQPSVGMRFAMMFETEESSKRRYTGTVVGISDYDPMRWPNSKWRNLQ 435
                      79*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1039 aa     Download sequence    
MRNHGFPPRK VGIFRAKQPR SAASHTGAAA AAAGERLGSQ DQEREGKRRK GDEGSTTTLL  60
RIIAIYCPHP TTTPTPVYST PQPLLLPPRE KAKTGVLRNA AALLDEMQLM GETQGAKKVI  120
NSELWHACAG PLVCLPQRGS LVYYFPQGHS EQVAATTRKI PNSRIPNYPN LPSQLLCQVH  180
NITLHADKDT DEVYAQMTLQ PVNSETDVFP IPTLGAYTKS KHPTEYFCKN LTASDTSTHG  240
GFSVPRRAAE KLFPQLDYSM QPPNQELIVR DLHDNMWTFR HIYRGQPKRH LLTTGWSLFV  300
GAKRLKAGDS VLFIRDEKSQ LLLGVRRATR QQTMLSSSVL STDSMHIGVL AAAAHAASSG  360
SSFTIYYNPR TSPSPFVIPV ARYNKATYMQ PSVGMRFAMM FETEESSKRR YTGTVVGISD  420
YDPMRWPNSK WRNLQVEWDE HGYGERPERV SIWDIETPEN TLVFPSSTLN SKRQCLPGYG  480
VSVPGMEIGS ANMSSFPRAQ GNPYGSLQHI PAVGSELAIM LLNQSGQTLG SPLSFHQSSY  540
SSIIQNVKQN YIPPLTVSTS ACLTKQESLP SDDAQHQFHM ANMQNGDLEG SEVQPVIDSI  600
SESKLNATSR DPRNTDPYTS RSTSEQNSKG EPRGKTRRSK KGLPHKTVSE KSDLSSAPSW  660
ICDNQQVGLE SKLVGCDEQV NCGNIEDSSG ALTQGNFVGQ PHGHQVEQKG VLSPPKVESS  720
KSPDGGKSVN SFPNQGCFSQ FIDGLDWMTQ PSYYQDSNVI QPAGVSENIF SSSADIPPSM  780
IADTMETFQA SCLSDCLPNS IQEFISSPDL NSLTFLSPDM QNLEVQLQHD GSNLPSTSNS  840
FVQMSFSEES ASQSANLSGL HMESTHRSIN TTSCSQPMST GGFDAGMYSK LPRLKESQIL  900
SLPEIHTNSM GTSACSMDAT EYSLDRSAKP MKPPVRTYTK VQKQGSVGRS IDVTGFRNYH  960
ELRSAIACMF GLQGKLEHPG SSEWKLVYVD YENDVLLVGD DPWEEFINCV RCIRILSPSE  1020
VQQMSENGMH VLNDCIQAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein