PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G25710.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 374aa    MW: 41040.1 Da    PI: 6.4025
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G25710.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.7e-06214233120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      + C+ C+k+F+r  n++ H+
  ONIVA04G25710.1 214 FICHVCNKTFNRYNNMQMHM 233
                      89*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MGLRTCSAME GEVVAASPFF EWLKPPPRPA SSSSWSSSFS SSSSMASRDQ ETVVPGEDGG  60
GEIQEDHKSG MTCLPLLSML EEGNSKRHEH PVKEEIMSSA HAAGVVEPGV ELNIGLPVTG  120
SSAQEVTMEE DDEEEDDDDV GEEEMDEWKP MHGGCKVEGD EEQYGEAVAS VEGSSSITAV  180
GDMFGGVGAE SGVAMSSRYW IPTPAQILVG PVQFICHVCN KTFNRYNNMQ MHMWGHGREY  240
RKGPESLKGT QTLAMLKLPC YCCAAGCKNN VAHPRARPLK DFRTLQTHYK RKHGAKPFRC  300
RRCAKPFAVK GDWRTHEKNC GKRWFCACGS DFKHKRSLND HVRSFGAHHL PVAESAAAAA  360
TTPADKDRII SFQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.12e-92C2H2 family protein